Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03099 ATGGAGGATCTAGCAGGTCTAGTCGAGGCAACAGGATCGAGATTTACTTCGTTGGAGCTTATTGGGCAGGGATCATTTGGCGATGTATATAAAGGGTTTGACAAGGAGCTCAACAAAGAAGTGGCCATCAAAGTGATTGATTTGGAAGAATCAGAGGATGATATTGACGATATTCAGAAGGAAATTTCTGTTCTGTCACAATGTCGATGTCCATACATTACGGAGTATTATGGTTCTTTTCTCAATCAGACTAAACTATGGATAATAATGGAGTATATGGCTGGCGGCTCTGTTGCTGATCTACTCCAATCAGGTCCTCCCCTAGATGAAATGTCAATTGCTTATATTCTTCGTGACTTGTTGCATGCTGTCGATTACCTTCATAGTGAAGGCAAAATCCATAGAGACATTAAAGCTGCAAACATTTTATTGTCAGAGAATGGTGATGTAAAGGTTGCAGATTTTGGTGTTTCTGCACAATTGACAAGGACTATATCAAGGAGAAAGACATTTGTAGGCACACCATTCTGGATGGCGCCTGAGGTTATTCAGAACTCAGATGGATATAATGAGAAGGCAGATATCTGGTCTCTGGGGATCACTGCAATTGAGATGGCAAAGGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGGGTGCTTTTCATCATACCCCGAGAAAATCCTCCACAGCTAGATGAGCATTTTTCTCGACCCATGAAAGAATTTGTTTCATCATGTTTGAAGAAGGTTCCGGCTGAGAGGCCAAGTGCTAAGGAACTTCTCAAAGACCGTTTTATTCGCAATGCTAGGAAGAGTCCAAAGCTTTTGGAAAGATTAAGGGAGCGTCCAAAATATCAAGTTAAGGAAGACCTGGAGACAGCTAGAAATGGCCAAAGAGGGATTGGTGAGGGATCAGACACTATGAAGGTGGCAAGAGATTCTAAAGTTGATGAAATCAATCGACCCAGCAGTCAGGGTAAGACCCCGAAAAGTTCTGAATGGGACTTTAGCATTGGTGAATCAGAGGGTACTGGAACCTTTCGAAGTGTTTCACGGCCACCACAGTCTAGAGATAAGAAAACTGAAGGTTCATATAATCAGCTTACCCAAAGAAAAGCTCTAGACGCTGGCTATCAAGGAGGATATGCCAATAGAAGTTCATTCAATCAATCACTTGAAAAAGATCTTAGAGCTCCTTACCTTCACGAGCAGTCGGATAATCAGCTTGAAGATGATGAATTATCTGAGAATGGATCAGGAACTGTTGTTATTCGATCTCCGAAAGGATCAAAGCCATCTGTGTTTCGTGAGAGCTCCCAGTCCAGCAGCAGCTATGCTTCTTTTGAAGATACTTCCACAAGTGGAACCATTGTTTTACGTAGTCAACAAGATGATTCTGATTCTCCACGGACTCCAAGGTCCCGGCTAGGACTTTATGACAGAAATTCAAATGTTTCACTTGAAGATAGTGCTGCAAACCTAGCCGAGGCAAAGGCTGCTATCCAAGGAGGGCAACGAAAAGTGAATGCTCGGGAAAGACATTCGCGGGGAAAAATCAATAGTGATAATATACAGGAAAGCAAAAGAGACCAAATGACTAGCAGCACTGATTCTTCCAGATCATATCGTGAATACATTGATGCACAAAGGGGCATGGTACGATCAAATTATGCCGGTGATGAGGAAGAAAGTGCTAGAATAATATCATCGTCGGCGCCATTATCAGTTTTGCTTATTCCTTCATTAAAAGAGGCTATTGCTGATGATCCAGAAGGGCAAATCGTGCGCGCAGTTATCAATTCTTTAATAAACATGGAGGGTACAAAGCCTAGATCCTCTGCTGTTTTTGTCAAAAAATTGCTTCAAAGATTAGCAAGTTCAAAGGAAGATTCATTGAAGGACCTTCAAGGACTAGCAAGCCAATTATTCAGCAAAGCCAAGTCAACCGAAGAAATTCAAAATGCGGAAGCTGATAACCGAAGGAAACAACATAACAAGGAACCTCATCCAAATAGCAACTTAAGCCCTCTTGCAAGATTTCTTCTATCAAGATGGCAAGGCCAAACTTCACGGGATCTAAATCAATCTTGA 2094 0.4212 MEDLAGLVEATGSRFTSLELIGQGSFGDVYKGFDKELNKEVAIKVIDLEESEDDIDDIQKEISVLSQCRCPYITEYYGSFLNQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIAYILRDLLHAVDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSDGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKEFVSSCLKKVPAERPSAKELLKDRFIRNARKSPKLLERLRERPKYQVKEDLETARNGQRGIGEGSDTMKVARDSKVDEINRPSSQGKTPKSSEWDFSIGESEGTGTFRSVSRPPQSRDKKTEGSYNQLTQRKALDAGYQGGYANRSSFNQSLEKDLRAPYLHEQSDNQLEDDELSENGSGTVVIRSPKGSKPSVFRESSQSSSSYASFEDTSTSGTIVLRSQQDDSDSPRTPRSRLGLYDRNSNVSLEDSAANLAEAKAAIQGGQRKVNARERHSRGKINSDNIQESKRDQMTSSTDSSRSYREYIDAQRGMVRSNYAGDEEESARIISSSAPLSVLLIPSLKEAIADDPEGQIVRAVINSLINMEGTKPRSSAVFVKKLLQRLASSKEDSLKDLQGLASQLFSKAKSTEEIQNAEADNRRKQHNKEPHPNSNLSPLARFLLSRWQGQTSRDLNQS 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03099 697 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 11 646 - -
Trre12g03099 697 MobiDBLite consensus disorder prediction 646 679 - -
Trre12g03099 697 Coils Coil 48 68 - -
Trre12g03099 697 Gene3D Transferase(Phosphotransferase) domain 1 12 300 - -
Trre12g03099 697 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03099 697 MobiDBLite consensus disorder prediction 508 526 - -
Trre12g03099 697 MobiDBLite consensus disorder prediction 322 353 - -
Trre12g03099 697 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Trre12g03099 697 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03099 697 Coils Coil 646 668 - -
Trre12g03099 697 MobiDBLite consensus disorder prediction 307 321 - -
Trre12g03099 697 FunFam serine/threonine-protein kinase dst1 isoform X1 12 300 - -
Trre12g03099 697 CDD STKc_MST3_like 13 285 - -
Trre12g03099 697 MobiDBLite consensus disorder prediction 420 466 - -
Trre12g03099 697 MobiDBLite consensus disorder prediction 652 669 - -
Trre12g03099 697 MobiDBLite consensus disorder prediction 505 542 - -
Trre12g03099 697 MobiDBLite consensus disorder prediction 408 483 - -
Trre12g03099 697 SUPERFAMILY Protein kinase-like (PK-like) 13 293 IPR011009 -
Trre12g03099 697 MobiDBLite consensus disorder prediction 288 373 - -
Trre12g03099 697 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03099 697 MobiDBLite consensus disorder prediction 527 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03099 Trre-Chr12 45139513 45150953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03099 1 694 MAP Kinase Kinase Kinase Kinase AT3G15220 64.183 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Trre12g03099 Pkinase 7.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03099 K08838 - gmx:100815042 1087.79