Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03094 ATGGAAACTTTCTACCACCACCACCACCACCACATCAACAACAACACCACCACCACCACCACCAACACCACCAACAATGATGCACATTTACCACCTGGTTTTCGTTTCCACCCAACAGATGAAGAACTCATAACATTCTACCTTCTTAAAAAAGTACTTGACAACACTTTCACTGCAAGAGCCATAGCTGAAGTTGATCTTAACAAATGTGAACCATGGGAGTTACCAGAAAAAGCTAAGATGGGTGAGAAAGAATGGTACTTCTTCAGTTTACGTGACAGAAAATATCCAACTGGGTTGCGTACAAATAGAGCCACTGAAGCTGGTTATTGGAAAGCAACAGGAAAAGACAGAGAGATTTATAGCTCAAAAACTTACTCTCTTGTTGGTATGAAGAAAACTCTTGTTTTCTACAGAGGTAGAGCTCCTAAAGGTGAAAAAAGTAACTGGGTTATGCATGAATATCGTCTTGAAGGAAAATTTGCTTACCATTTTCTCTCTAGAAACTCCAAGGATGAATGGGTCATTTCACGAGTGTTTCAAAAGAGCAACACCGGAAACGGTGGCACAACCGTGTCAGCCACCACAAGTGGTTCAAAAAAGACCAAAATAGCCTCAACAAACTCTGCAAGCAACAACAGCATGAGTCTTTGTCCTGAACCAAGTTCACCTTCTTCGGTTTATCTTCCACCTCTTCTTGATTCATCTCCTTATGCCGCCGCTACCACCGCCGCGTTCAACGGTGGTCAAATGTGTAACTACAACAGCTCCAACAACAACACTGAACAAAAGGAGCACGTGTCCTGTTTCTCCACAACATCTACAACATCAAATGTTGTTAACAACTTCAACAACAATAACAACAATGGAAGTTTTGATCTTGTTTCTCCTATGAATGCTAGTATGGATCCTTTTGCAAGGTTCCAAAGGAATGTTGGTGTTTCTGCTTTTCCTAGCTTGAGATCACTACAAGATAATCTTCAACTTCCTTTCTTTTTCTCCCCGGCGGCGGCGGCTCAGCCTTTTCATGGTGGTGGTGGTGGTGATTTTCTTGGTGGTTGGGGAATGCCGCCGACCGAGGATCAAAGGGTGGTGGTTGATGGTGGTGGCCATAATATGGGAGGATTGGTTTCATCTGAGCTTGATTGCATGTGGAACTATTAA 1164 0.4296 METFYHHHHHHINNNTTTTTTNTTNNDAHLPPGFRFHPTDEELITFYLLKKVLDNTFTARAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTYSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHFLSRNSKDEWVISRVFQKSNTGNGGTTVSATTSGSKKTKIASTNSASNNSMSLCPEPSSPSSVYLPPLLDSSPYAAATTAAFNGGQMCNYNSSNNNTEQKEHVSCFSTTSTTSNVVNNFNNNNNNGSFDLVSPMNASMDPFARFQRNVGVSAFPSLRSLQDNLQLPFFFSPAAAAQPFHGGGGGDFLGGWGMPPTEDQRVVVDGGGHNMGGLVSSELDCMWNY 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03094 387 Gene3D NAC domain 39 186 IPR036093 GO:0003677|GO:0006355
Trre12g03094 387 FunFam NAC domain-containing protein 100-like 39 186 - -
Trre12g03094 387 SUPERFAMILY NAC domain 19 182 IPR036093 GO:0003677|GO:0006355
Trre12g03094 387 MobiDBLite consensus disorder prediction 186 218 - -
Trre12g03094 387 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 29 270 - -
Trre12g03094 387 MobiDBLite consensus disorder prediction 14 28 - -
Trre12g03094 387 MobiDBLite consensus disorder prediction 1 28 - -
Trre12g03094 387 Pfam No apical meristem (NAM) protein 31 157 IPR003441 GO:0003677|GO:0006355
Trre12g03094 387 ProSiteProfiles NAC domain profile. 30 182 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03094 Trre-Chr12 45093439 45095668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03094 1 387 NAC Transcription Factor Family AT5G53950 50.360 1.58e-121 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre12g03094 NAM 1.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03094 - - vun:114185732 439.113