Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03090 ATGGCTCCAAGAGACAACAACAGAGTCACCACCGCAATTACTGGGCCCAATTCAACGGCCCAGGCCCAGTCTCAGGCCCAAAAAGAGATCCGTTTCAGAGGCGTGAGAAAACGTCCATGGGGTCGTTACGCCGCCGAGATCCGTGACCCAGGTAAAAAGACACGTGTATGGCTAGGAACGTTTGACACCGCTGAAGAAGCGGCGCGTGCTTACGACACGGCGGCACGTGAGTTTCGTGGTTCAAAAGCGAAAACAAATTTCCCAACACCGATGGAGATTATTAATAACCGTAGCCCAAGTCAGAGTAGTACTCTTGAATCACCTTCACCACCGCCGCTTGATCTAACACTCACACCATTCTCAGCCGCCGCTACCGGCGGCGTTACGTTGGCTTTTCCTGTTGCTCGTCCGGTTATGTTTTTTGATGCTTTTGCTCGTCCTGAAACGAAGCTTAGCCTTGTCGGTAGACGTGAGATGTGTGGATTTGATCTTCCTGTGGCTGATTTTCGACGCGCCGCCGTTCAGAGTTGTGACTCTGGTTCATCTTCTTCCGTTGTTGATTATGAACGTGTGCCAAGTCAGAGACACTTGGATCTTGATCTTAACGTTCCACCTCCACCTGAAGTTGCTTGA 633 0.5103 MAPRDNNRVTTAITGPNSTAQAQSQAQKEIRFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPTPMEIINNRSPSQSSTLESPSPPPLDLTLTPFSAAATGGVTLAFPVARPVMFFDAFARPETKLSLVGRREMCGFDLPVADFRRAAVQSCDSGSSSSVVDYERVPSQRHLDLDLNVPPPPEVA 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03090 210 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Trre12g03090 210 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Trre12g03090 210 MobiDBLite consensus disorder prediction 88 111 - -
Trre12g03090 210 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Trre12g03090 210 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Trre12g03090 210 MobiDBLite consensus disorder prediction 1 29 - -
Trre12g03090 210 FunFam Ethylene-responsive transcription factor 2 31 89 - -
Trre12g03090 210 MobiDBLite consensus disorder prediction 84 113 - -
Trre12g03090 210 CDD AP2 31 88 IPR001471 GO:0003700|GO:0006355
Trre12g03090 210 MobiDBLite consensus disorder prediction 7 28 - -
Trre12g03090 210 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 155 - -
Trre12g03090 210 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Trre12g03090 210 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700|GO:0006355
Trre12g03090 210 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03090 Trre-Chr12 44948886 44949518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03090 16 142 AP2-EREBP Transcription Factor Family AT3G15210 57.432 1.99e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre12g03090 AP2 8.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03090 K09286 - gmx:100500601 220.32