Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03073 ATGAACCCTAATTGGGTTCAACTCCAACAAAAGCTGAATCTTAATGGCCCCAAAGTTACAAGGAACTTCAATGATTCTGATGATGACATCCCAAATTCAATATTGGGGAAACGTAAAGTGAGACTAGATGATTCTGATGATTGTGAGATTAACCCTCTTGCTCCTGTAAATGATGATGCAAGTTTGACAGATGTTGTTGCCATGGATTGCGAAATGGTTGGAGTTGGTCAAGGTAACAAAAGTGCCCTTGCAAGAGTAACACTGGTTAACAAGTGGGGTAATGTTATTTATGACGAGTTTGTACGGCCAATGGAGCGGGTTGTTGACTTCCGTACTAAAATTAGTGGCATAAGACCTCGAGATCTGAGAAAAGCAAAGGATTTTTCTACTGCTCAGAAGAAGGTGGCAGAGTTGATCCACGGAAGGATCCTTGTAGGTCATGCCTTGTCCAATGATCTTAAGGCATTATTATTAAGTCATCCGAAAAAGGATATACGAGATACCTCCGAGTACCCGCCGTTTCTAAGGTCAAGTGGTAGAGTAGCATTGCGGCATCTCGCTTCGGAACATCTTGGTGCTAAGATTCAAACAGGAGAGCACTGCCCGATAGATGACGCCCGTGCTGCTATGATGCTTTACCAGAAAAATAGAAAAGAATGGGAGAAGAGCATAAAAGGTAACTTTCGATCCAAACAGAAGCAAAAGAAACGGAAGAAGATAAAAGATGCAGAATAA 735 0.419 MNPNWVQLQQKLNLNGPKVTRNFNDSDDDIPNSILGKRKVRLDDSDDCEINPLAPVNDDASLTDVVAMDCEMVGVGQGNKSALARVTLVNKWGNVIYDEFVRPMERVVDFRTKISGIRPRDLRKAKDFSTAQKKVAELIHGRILVGHALSNDLKALLLSHPKKDIRDTSEYPPFLRSSGRVALRHLASEHLGAKIQTGEHCPIDDARAAMMLYQKNRKEWEKSIKGNFRSKQKQKKRKKIKDAE 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03073 244 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 53 233 IPR047021 GO:0004527
Trre12g03073 244 SMART exoiiiendus 64 222 IPR013520 -
Trre12g03073 244 Pfam Exonuclease 66 213 IPR013520 -
Trre12g03073 244 FunFam Interferon-stimulated exonuclease gene 20 61 232 - -
Trre12g03073 244 MobiDBLite consensus disorder prediction 223 244 - -
Trre12g03073 244 Gene3D - 60 240 IPR036397 GO:0003676
Trre12g03073 244 SUPERFAMILY Ribonuclease H-like 65 219 IPR012337 -
Trre12g03073 244 Coils Coil 203 223 - -
Trre12g03073 244 CDD REX4_like 66 214 IPR037431 GO:0006364|GO:0008408
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03073 Trre-Chr12 44667941 44671523 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03073 65 219 C2H2 Transcription Factor Family AT5G40310 37.427 4.73e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03073 K18327 - gmx:100819122 386.341