Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03072 ATGAAGAAATCCCAAATGAACCCTAATTGGGTTCAACTCCAACAAAAGCTGAATCTTAATGGCCCCAAAGTTACAAGGAACTTCAATGATTCTGATGATGACATCCCAAATTCAATATTGGGGAAACGTAAAGTGAGACTAGATGATTCTGATGATTGTGAGATTAACCCTCTTGCTCCTGTAAATGATGATGCAAGTTTGACAGATGTTGTTGCCATGGATTGCGAAATGGTTGGAGTTGGTCAAGGTAACAAAAGTGCCCTTGCAAGAGTAACACTGGTTAACAAGTGGGGTAATGTTATTTATGACGAGTTTGTACGGCCAATGGAGCGGGTTGTTGACTTCCGTACTAAAATTAGTGGCATAAGACCTCGAGATCTGAGAAAAGCAAAGGATTTTTCTACTGCTCAGAAGAAGGTGGCAGAGTTGATCCACGGAAGGATCCTTGTAGGTCATGCCTTGTCCAATGATCTTAAGGCATTATTATTAAGTCATCCGAAAAAGGATATACGAGATACCTCCGAGTACCCGCCGTTTCTAAGGTCAAGTGGTAGAGTAGCATTGCGGCATCTCGCTTCGGAACATCTTGGTGCTAAGATTCAAACAGGAGAGCACTGCCCGATAGATGACGCCCGTGCTGCTATGATGCTTTACCAGAAAAATAGAAAAGAATGGGAGAAGAGCATAAAAGGTAACTTTCGATCCAAACAGAAGCAAAAGAAACGGAAGAAGATAAAAGATGCAGAATAA 750 0.4173 MKKSQMNPNWVQLQQKLNLNGPKVTRNFNDSDDDIPNSILGKRKVRLDDSDDCEINPLAPVNDDASLTDVVAMDCEMVGVGQGNKSALARVTLVNKWGNVIYDEFVRPMERVVDFRTKISGIRPRDLRKAKDFSTAQKKVAELIHGRILVGHALSNDLKALLLSHPKKDIRDTSEYPPFLRSSGRVALRHLASEHLGAKIQTGEHCPIDDARAAMMLYQKNRKEWEKSIKGNFRSKQKQKKRKKIKDAE 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03072 249 Pfam Exonuclease 71 218 IPR013520 -
Trre12g03072 249 SUPERFAMILY Ribonuclease H-like 70 224 IPR012337 -
Trre12g03072 249 MobiDBLite consensus disorder prediction 228 249 - -
Trre12g03072 249 FunFam Interferon-stimulated exonuclease gene 20 66 237 - -
Trre12g03072 249 Coils Coil 208 228 - -
Trre12g03072 249 CDD REX4_like 71 219 IPR037431 GO:0006364|GO:0008408
Trre12g03072 249 SMART exoiiiendus 69 227 IPR013520 -
Trre12g03072 249 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 58 238 IPR047021 GO:0004527
Trre12g03072 249 Gene3D - 65 245 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03072 Trre-Chr12 44667926 44671523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03072 70 224 C2H2 Transcription Factor Family AT5G40310 37.427 4.36e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03072 K18327 - gmx:100819122 388.267