Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03070 ATGGATCAAATGACAGATTCGGATATGGATCAGCAGCGGCAAGGCTATTTTCATTCTGAACCGTGTGTTGTTTTGAGAGGCCCCAACGTCGGACATCCTAATATGCGCTCAGTGGTGACTGCTTCCGGGAATGCAACGAATGTTGATTCTCATTATTTACCAGATGCTTATGACAATGCTAGGGTGTATGGGATTACACAATACAATGGCATGCCGCCTCAACATAATCTCGAGATGGGCGTTGCAACAGCAGGCAACATATATTATTCTGGCATGAATCCTTCTTCAAGTACTGGTGTTTTCCCTCTGCCTCATAGAGCCTCTGATCAGTTACCAGGTTCAAGCACATTTGCAATCTCCGGTGTTTCCTTAGATAATTTCGGAAGAAGCGCTGGTTTCATGGATGACGCTAGAGGTCCGTACAAAAGGAAAGTTGCTGAAGGGATTAGAGGAAACCATCAACATTTTAATGCTTCAACTAGTTCTTCTATTGCTCCCCCGAATGCAAGACATGCTGATGGGGTTGCTATGATGGACACTGCACCACTGCCATTCCGTGTCCCATCCCTCATTGGAGTAGGACCACATGGCGGTGCATGGAGCAGGTCAGGTGAGTCTATTATGGTGCATGACCATAACCATTTGATTCACGGAAACTATTTGGGGCAGCACTTTCCGCCAGCCGCTCCTCCTTGGCTGGACCAGCAAGTGAATACTAATAGCAATGATGGCCATACTGCAGCCTGGAATCCTTCTGTTCCAATGCCTTATATTCAAGCACCCAATATTAATGGAAGTTCATTAGAGAGTGCAAGTATGGGTTTGCAGAGGTATCATGACGCAGCCGGTAACCGCAATGTCCTGAGGTTTCCTCCTCCGCCTCCTCCTGTCAGCCAACAGCACCCTAATTATCACCATCCAACACTTCCTATGCAAGGAATAAGAGGTCACAATATCAGCTTTCACCCTCCGGTAACTGCAGCTTCATTTAGGGTTCCACCAAATCCTCCACGTGGTGCTGTGATCCCTCCACAGACTGGTTTTGAGGCAGGTCCGAGGCATATCATACCTGCACCATCAACAGGCTTCCGGATTTATCGACCTCATAGGCTCATGCCAGAGACAGCTCTCGGACATCGAAGTCTACCTCCCATGGGCTTCCTCCAAGTTGATGATGTTGCTTTAATTGATGAAGTCGGAAATCTGATTGACCATCACCGGGATATGCGTTTGGACATAGAGGACATGTCATATGAGGATCTACTAGCATTAGGCGAGAGGATTGGCAGTGTGAACACTGGTTTATCCGAGGAAACAATTGCAAATCAACTAAAGACGAAAGTTTATTCTATGAAAGCCGCTGCTATTAATCTGGAGGAGGTAGCTTCTGATGACCAGGAAACTGATTCCTGCATAATTTGTCAGGATGATTTTAAGAACGAAGAGAAGATTGGAATTCTTCGATGCGAGCATGAATATCATGTGGATTGCTTGACGAAATGGTTGCTTGTGAAGAACGTTTGTCCGATATGCAAGTCAGAAGCATTGGCTCCTGGAAGGAACGACGCATAA 1572 0.4637 MDQMTDSDMDQQRQGYFHSEPCVVLRGPNVGHPNMRSVVTASGNATNVDSHYLPDAYDNARVYGITQYNGMPPQHNLEMGVATAGNIYYSGMNPSSSTGVFPLPHRASDQLPGSSTFAISGVSLDNFGRSAGFMDDARGPYKRKVAEGIRGNHQHFNASTSSSIAPPNARHADGVAMMDTAPLPFRVPSLIGVGPHGGAWSRSGESIMVHDHNHLIHGNYLGQHFPPAAPPWLDQQVNTNSNDGHTAAWNPSVPMPYIQAPNINGSSLESASMGLQRYHDAAGNRNVLRFPPPPPPVSQQHPNYHHPTLPMQGIRGHNISFHPPVTAASFRVPPNPPRGAVIPPQTGFEAGPRHIIPAPSTGFRIYRPHRLMPETALGHRSLPPMGFLQVDDVALIDEVGNLIDHHRDMRLDIEDMSYEDLLALGERIGSVNTGLSEETIANQLKTKVYSMKAAAINLEEVASDDQETDSCIICQDDFKNEEKIGILRCEHEYHVDCLTKWLLVKNVCPICKSEALAPGRNDA 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03070 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 431 516 IPR013083 -
Trre12g03070 523 SMART ring_2 471 511 IPR001841 -
Trre12g03070 523 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 100 516 IPR045191 GO:0061630
Trre12g03070 523 FunFam E3 ubiquitin ligase BIG BROTHER 431 516 - -
Trre12g03070 523 Pfam Ring finger domain 469 512 IPR001841 -
Trre12g03070 523 CDD RING-H2_RNF24-like 469 515 - -
Trre12g03070 523 ProSiteProfiles Zinc finger RING-type profile. 471 512 IPR001841 -
Trre12g03070 523 SUPERFAMILY RING/U-box 465 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03070 Trre-Chr12 44634663 44637170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03070 388 516 C3H Transcription Factor Family AT2G15530 44.444 1.35e-33 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03070 K19041 - gmx:100800642 707.212