Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03061 ATGGCACAGTTACCTCCTAAAATACCAACCATACCCCAAAATTGGCCATATTCTCCTCACCAAAAGGTATCATCATCGTCCACAATGTCAAATATCACCTCCACGACCACCACCACCACCACGACCACAGCTACAACTCTGAATAATACTTCTGACCAACAATTACCATCATGGATCGACGAATTCCTCGACTTCTCCTCGGTAAGACGAGGGGCTCACCGGCGTTCTGCCAGTGACTCAATTGCCTTCCTCGAGACATCTTTTCTCGAGGAAGACTGCAGAAGTGGTGGTGGAGGAGGTGGTGGTGACTTTGATAGACTGGATGATGACCAATTTATTTCCATGTTCTCCGACAATGTTGCCGGCGTCTCTTTCCCGCCTCCACCGTTGTCGTCAACCTCCAACCCGTCGTCGCCGTCCTCCGACCAAAATAGCAATAACAATGAAGAGAAACCAATGGCAATGGCGATGGATGCACCACCTCAAGAGCATTATCTTCATCATCATGGGGTGAAGCCTAAGGATGAAGCAGTTGATGATGAAAATTCATGTAAAATGGAGGCGGCGGTGGCGGGGCCATCGTCCGCCACAACCATCACCTGCACTGAAACCGTTGTTGATCCCAAGAGGGTCAAAAGAATTTTGGCTAACCGGCAATCAGCTCAGAGGTCAAGGGTGAGAAAGCTACAATACATTTCTGAGCTAGAAAGGAGTGTAACATCTTTGCAGACAGAAGTTTCAGCATTATCTCCACGAGTTGCATTCTTGGACCATCAACGTTTGATTCTTAATGTCGACAATAGTGCCTTAAAGCAACGGATTGCAGCATTGGCCCAAGACAAGCTTTTCAAAGATGCTCATCAAGAAGCATTAAAGAAAGAAATAGAAAGGTTGAGGCAAATATATCACCAACAAAATATACAAAAGATGGGCAATTCAGTCAATAATAATAATAATAACAATGGCCATTCTCTTCAATCTCCACCAACATCACAACCACAACAACACTCTTTTCATCAGCACAAGGAGCAACTCCTCAGTTAA 1044 0.4531 MAQLPPKIPTIPQNWPYSPHQKVSSSSTMSNITSTTTTTTTTTATTLNNTSDQQLPSWIDEFLDFSSVRRGAHRRSASDSIAFLETSFLEEDCRSGGGGGGGDFDRLDDDQFISMFSDNVAGVSFPPPPLSSTSNPSSPSSDQNSNNNEEKPMAMAMDAPPQEHYLHHHGVKPKDEAVDDENSCKMEAAVAGPSSATTITCTETVVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKLFKDAHQEALKKEIERLRQIYHQQNIQKMGNSVNNNNNNNGHSLQSPPTSQPQQHSFHQHKEQLLS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03061 347 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 207 259 IPR004827 GO:0003700|GO:0006355
Trre12g03061 347 MobiDBLite consensus disorder prediction 14 50 - -
Trre12g03061 347 SUPERFAMILY Leucine zipper domain 209 263 IPR046347 GO:0003700|GO:0006355
Trre12g03061 347 Gene3D - 208 260 - -
Trre12g03061 347 CDD bZIP_plant_RF2 210 260 IPR044759 GO:0003700|GO:0006355
Trre12g03061 347 MobiDBLite consensus disorder prediction 310 347 - -
Trre12g03061 347 PANTHER BASIC LEUCINE ZIPPER 34 1 336 - -
Trre12g03061 347 SMART brlzneu 205 269 IPR004827 GO:0003700|GO:0006355
Trre12g03061 347 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 212 227 IPR004827 GO:0003700|GO:0006355
Trre12g03061 347 Coils Coil 288 308 - -
Trre12g03061 347 MobiDBLite consensus disorder prediction 119 152 - -
Trre12g03061 347 MobiDBLite consensus disorder prediction 1 50 - -
Trre12g03061 347 FunFam Basic leucine zipper 61 208 281 - -
Trre12g03061 347 Pfam bZIP transcription factor 209 254 IPR004827 GO:0003700|GO:0006355
Trre12g03061 347 MobiDBLite consensus disorder prediction 135 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03061 Trre-Chr12 44549581 44552706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03061 1 287 bZIP Transcription Factor Family AT3G58120 50.799 1.03e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre12g03061 bZIP_1 1.6e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03061 - - gmx:100820197 372.089