Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03049 ATGAACGGTGGAGAGATAGTGGAAGTTGACGGTGGTCACATTATAAGGTCAAGAGGTAGAAAAGATCGTCATAGTAAAGTTTGCACGGCGAAAGGGCCGAGAGATAGACGTGTCCGTCTCTCGGCCCATACCGCCATTGAATTTTATGATGTTCAAGATCGATTGGGCTTTGATAGGCCCAGTAAAGCCCTTGATTGGCTCATTAATAAAGCCAAGCCCGCCATCGATCAACTCGATCAACTTCCTCCATGGAAACCAACTCTTGTAACTAAACAACAACAACAACAACAACAAAACGACAACGTTTCGGAGAAACTGATTGGTAACGGTGACGGTAACGGAAACGAAAACGAGCTTCGTTTTCTTCAGAATTTGAACAGCAATAGCAACGGATTTGTTCCGTTTGAAAGTGAAATTGGTGAAACGACGTCGTCTTCGCCGATTCAGTTTCCTGATTTGCTTTCGAGAACGAATAGTAATGATTTGAGACTTTCGTTGCAACAGAATCAGCACGTGCAACCGCACGTGCTTTTCGCCGGAAATTTTGATGGAATGGTAGCGTGGAATTCCGGTGGCGGTGGTGCTGCTATTGATACTGGTAGTAGCGCTGCAGGTGGTGGTGGTGGTAATAATGACGATGCTTCAGGTGGAGGTTTTGTGTTTCATACTCCTTCACCGTCGCCGGTGGTTTTTCCGGCGGTGATGTATGGTCAGAATCAGTATCTTTCTCAGAGGGGACCCCTTCAGTCCAGTTACAATCCTTCATTTCGTGCTTGGATCGATGCGCCGACGTTTGTTGCTGCTGATTATCAACGTCAGGCAGTTGCTTTGGGTGCCGGATTTGCTTCTGGTGGCTTTTCTGGTTTCCGTGTGCCGGCACGAATTGGAGGTGATGATGATGAGGTGCATGGCGGTTTATCTGACAGGCCGTCGTCTGCTTCCTCATATTCTCGCCGTTGA 960 0.475 MNGGEIVEVDGGHIIRSRGRKDRHSKVCTAKGPRDRRVRLSAHTAIEFYDVQDRLGFDRPSKALDWLINKAKPAIDQLDQLPPWKPTLVTKQQQQQQQNDNVSEKLIGNGDGNGNENELRFLQNLNSNSNGFVPFESEIGETTSSSPIQFPDLLSRTNSNDLRLSLQQNQHVQPHVLFAGNFDGMVAWNSGGGGAAIDTGSSAAGGGGGNNDDASGGGFVFHTPSPSPVVFPAVMYGQNQYLSQRGPLQSSYNPSFRAWIDAPTFVAADYQRQAVALGAGFASGGFSGFRVPARIGGDDDEVHGGLSDRPSSASSYSRR 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03049 319 MobiDBLite consensus disorder prediction 297 319 - -
Trre12g03049 319 Pfam TCP family transcription factor 19 113 IPR017887 -
Trre12g03049 319 ProSiteProfiles TCP domain profile. 20 78 IPR017887 -
Trre12g03049 319 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 249 IPR005333 GO:0003700
Trre12g03049 319 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03049 Trre-Chr12 44330622 44331581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03049 4 318 TCP Transcription Factor Family AT3G15030 41.481 7.33e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre12g03049 TCP 6.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03049 - - tpra:123895106 502.671