Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03032 ATGTTGAACAACGGAGTGTCCACTCTCCGCACGTGCCTCCGCCTCCCGGAGCGCCCAATTTTTCGTGCAGCTCCGTTCTCCTTCCGTTTCCGGCGCCGGTTTCTCGTAACCGCATCACTAACAGACAAAAAGAAAGAGAAGGTGATAGTTATTTCTGGACCTACCGGTTCCGGCAAGAGCCGCCTCGCAATGGAACTCGCAAAACTCCTCAATGGCGAAATCGTTAGCGCTGATTCTGTTCAGGTGTATAAGGGTCTTGATATTGGATCTGCCAAGCCTTCCTTAAATGATAGAAAGGAAGTGCCGCATCATCTGGTTGACATACGTCACCCATCTGAAGATTATTCTGTTGGACAGTTTTTTGAGGATGCAAGGCAAGCGACAAGATCTATTCTTGACAACGGCCGTGTTCCAATAGTTGTTGGGGGAACTGGATTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTGCCTAAGTCCTCTGTAGAGATAACATCTCAAGTTTGTATGGAGTTAGCTGAACTACAGAGACATAATGACTGGGAAGCTGCTGTGCAGTTGGTGGTAAAAGCAGGTGATCCAAAGGTTCAACATATAGCAGTGAATGATTGGTACCGATTACGGCGTAGTCTAGAGATTATTAAGTCTAGTGGATCACCTCCTTCAGCTTTTCGGGTACCATATGATTCTTTCAGGAAACAGGGTGATTGTAGAGTTGCTGATAGTTCTGATTCAGCTGATATGAATACTTATAATGATGCAGTCAAAGAAACTGCCGATTCAGCAAAGTTAGATTACGAGTTCATGTGTTTTTTCCTTTCTAGTGACAGACTTGACCTCTATAGATCAATTGATTGTCGGTGTGAAGATATGCTATTAGGAGGAGATAGCATTTTGTCTGAGGCTCAGTGGCTTCTTGATACCGGTCTTCATCCAAACTCCAACTCTGCAACAAAAGCAATTGGTTATAGACAGGCCACGGAGTACTTACTAGGATGCAGACAACAAGGGGGTCAGAGTTCAGCTGGAGAATTTTACAGATTTTTGTCTGAATTTCAAAAAGCATCACGGAATTTTGCAAAACGGCAGTTGACTTGGTTTCGCAATGAGCGTATATACCACTGGCTTGATGCTTCTGAACCTCTGGAAACTATTCTGAACTTCATTCATGACGCATACCATGATCGGAATGGAAGTCTATTTGTGCCTGAACACCTTAGAATGCCAAGAGATATTTCTAATTCCCGAATAGCTGGTAAACTAAAGGCTTACCGCACCAGAAATAGGCATTTTGTGGATGGGGAAGATTGTTATCCTATTTTGGAATGGATAAAGAAGACCCAAAAGTGA 1353 0.4346 MLNNGVSTLRTCLRLPERPIFRAAPFSFRFRRRFLVTASLTDKKKEKVIVISGPTGSGKSRLAMELAKLLNGEIVSADSVQVYKGLDIGSAKPSLNDRKEVPHHLVDIRHPSEDYSVGQFFEDARQATRSILDNGRVPIVVGGTGLYLRWFIYGKPDVPKSSVEITSQVCMELAELQRHNDWEAAVQLVVKAGDPKVQHIAVNDWYRLRRSLEIIKSSGSPPSAFRVPYDSFRKQGDCRVADSSDSADMNTYNDAVKETADSAKLDYEFMCFFLSSDRLDLYRSIDCRCEDMLLGGDSILSEAQWLLDTGLHPNSNSATKAIGYRQATEYLLGCRQQGGQSSAGEFYRFLSEFQKASRNFAKRQLTWFRNERIYHWLDASEPLETILNFIHDAYHDRNGSLFVPEHLRMPRDISNSRIAGKLKAYRTRNRHFVDGEDCYPILEWIKKTQK 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03032 450 Gene3D - 157 227 - -
Trre12g03032 450 Gene3D - 45 412 IPR027417 -
Trre12g03032 450 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 48 225 IPR018022 GO:0008033
Trre12g03032 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 173 IPR027417 -
Trre12g03032 450 FunFam tRNA dimethylallyltransferase 9 156 227 - -
Trre12g03032 450 Pfam IPP transferase 81 371 - -
Trre12g03032 450 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 45 381 IPR039657 -
Trre12g03032 450 CDD NK 48 100 - -
Trre12g03032 450 Hamap tRNA dimethylallyltransferase [miaA]. 48 388 IPR018022 GO:0008033
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03032 Trre-Chr12 43996972 44001225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03032 51 331 C2H2 Transcription Factor Family AT2G27760 25.263 2.91e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03032 K00791 - gmx:100808814 708.753