Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03031 ATGTCTTCCTCCAGAAAAGTGACCAAAAAAGCTTCATCTTCCCAAAGAATGACTCCAAGAGTGACTCCAGCTAGGTCTGAGCAAACAATGGTCCAGTATCTGCCAAACAGAGGAGGATTCTTAACAGCTCACATCATTGGACAGGATTATGGAGAAATGAACCCAAAGTTTATCTTTGAAGTTTATGAAGAACTTGATTCAAAACTGACTATCTGTGATGAAACTAACCGAAACATGAAAGTTGAATGGAATGGTTCCTCTCAACATCCTTTAATACTCACTGGATGGAAAAACCTTAGGAGGTTCTTTGGAATCACTGGGAACAAAATGCTTCTCATGACTTATCTTGGAACTTCAGCTTTCTTGCTTCAGATTCTCCCTCAACCATTTGATCCATTGAACTTGCCTTCTTATCATTCATACCGGACTTTTGAAGCTGACCCAACATCATTTGATGTTAAGCTCACTGCTTACCATGTATCAGGTTCTCAATTGACTTTGACAAAGGAGTTTGCTGCCTACATTCGCCAAACAAAGTTCAAAACATTGCTTCTTTATGGACCAGAGGGAGATGAATTTAGCTGCTCAATTCTGAGGAGCAAAAAGCAAACAAAAATTGGTAAAGGTTGGAAAGAATTTGTGTATAAGAATAGCTTTGAAGAAGGTGAAGTGCTCAACTTTAAGTTTGTCAACAAGTATGAATCAAATGTCATGAGGGTTATTCTCCGCTAA 732 0.3866 MSSSRKVTKKASSSQRMTPRVTPARSEQTMVQYLPNRGGFLTAHIIGQDYGEMNPKFIFEVYEELDSKLTICDETNRNMKVEWNGSSQHPLILTGWKNLRRFFGITGNKMLLMTYLGTSAFLLQILPQPFDPLNLPSYHSYRTFEADPTSFDVKLTAYHVSGSQLTLTKEFAAYIRQTKFKTLLLYGPEGDEFSCSILRSKKQTKIGKGWKEFVYKNSFEEGEVLNFKFVNKYESNVMRVILR 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03031 243 ProSiteProfiles B3 DNA-binding domain profile. 150 243 IPR003340 GO:0003677
Trre12g03031 243 MobiDBLite consensus disorder prediction 1 26 - -
Trre12g03031 243 Pfam B3 DNA binding domain 153 238 IPR003340 GO:0003677
Trre12g03031 243 CDD B3_DNA 150 232 IPR003340 GO:0003677
Trre12g03031 243 SUPERFAMILY DNA-binding pseudobarrel domain 55 126 IPR015300 -
Trre12g03031 243 SUPERFAMILY DNA-binding pseudobarrel domain 145 238 IPR015300 -
Trre12g03031 243 Gene3D - 137 243 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03031 Trre-Chr12 43994410 43995732 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre12g03031 B3 5e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03031 - - tpra:123900141 233.032