Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03008 ATGGGATCATCTTTCAATCCCATCTCATGCAACAGAAAAACTTCATACAGATTAGAAACCAAAAACTTATCATACAGATTGTGCAGCCAACTTGATGAACTTAGAACTCTTTGTTTCGGTTCGAATCCTCGGAGAAGTTCAAAGTTCATTTTGAAGGATGTAAATTGTGAGGCAAGGCCGGGGGAGGTTACTGCTATTGCCGGTCCTAGTGGAGCTGGAAAAACAACACTGCTTGAAATTCTTGCCGGGAGAATACCCTCGTGTAAAGTTTCGGGACAAGTACTTGTCAATCATATGCCTATGGATGTAAACAGATTCAGAAGAGAATCCGGATATGTCACGCAAGAAGATGCTTTGTTTCCATCGCTTACGGTTAGAGAGACACTCATGTATAGTGCTTTGTTGAGGCTTCCCGGGGGACGAAAAGCGGCTGCTATGAGAGTTGCAGAGTTGATGAAGGAGCTCGGGCTGGATACTATTGCAGATTCAAGAATTGGCAATGGATCAGACCATGGTATATCGGGCGGGGAAAGGCGTAGAGTTTCCATTGGTGTTGACTTGGTTCATGACCCTGCAATTATTTTGATTGATGAACCAACTTCAGGCTTGGATTCAGCATCAGCTCTTAAAGTAATCTCATTGCTTAGATTAATGGCATTTAATCAAGGTAAGACAGTTGTTTTAACTATCCATCAACCCGGTTTCCGAATCTTAGAGCTACTTGATAGCCTCATTTTGCTATCTGATGGATTTGTCACACATAATGGTTCATTGAATCTGCTCGAGGCAAGGCTCAATTTATCCGGTCATCGCATTCCTAACCATGTCAATGTCCTAGAATTTGCTCTTGATGCCATGCAAACCTTGGTTATACATACTTCAGAATCTAGGAACAATCAATTTCTTATCAATGACAAAAATCACCAAGATCACAAGATGATGATGCAGTGCTCCATGATTGTCAAAGAAAAGGCTATTTCGTACTCAAATTCTCCAATGGAAGAAATTTTAATCCTAGGACAAAGATTTTGCAGCAACATATTCAGAACCAAGCAACTCTTTGTTACAAGGGTCATACAGGCCTTAGTAGCTGGATTTGTATTGGGGACGATATTTTTGAATGTTGGCAACAAACAAAGTAAAATAGCATTACAAACGCGAAGCGGCTTCTTCGCTTTCAGCCTTACCTTTTTGTTATCATCAACAACAGAAGGGTTACCTATTTTCTTGGAGGAGAGAAGAACTTTTATGAGAGAGACCTCAAGAGGAGCTTATAGAGTTTCTTCATATGTTTTAGCAAATACACTTGTGTTTCTTCCTTTTCTTCTAATGGGTATTTCATATCAAAGGAAAAAATACCTAGTTACTGGATTTTTATGCACTACATAA 1389 0.3988 MGSSFNPISCNRKTSYRLETKNLSYRLCSQLDELRTLCFGSNPRRSSKFILKDVNCEARPGEVTAIAGPSGAGKTTLLEILAGRIPSCKVSGQVLVNHMPMDVNRFRRESGYVTQEDALFPSLTVRETLMYSALLRLPGGRKAAAMRVAELMKELGLDTIADSRIGNGSDHGISGGERRRVSIGVDLVHDPAIILIDEPTSGLDSASALKVISLLRLMAFNQGKTVVLTIHQPGFRILELLDSLILLSDGFVTHNGSLNLLEARLNLSGHRIPNHVNVLEFALDAMQTLVIHTSESRNNQFLINDKNHQDHKMMMQCSMIVKEKAISYSNSPMEEILILGQRFCSNIFRTKQLFVTRVIQALVAGFVLGTIFLNVGNKQSKIALQTRSGFFAFSLTFLLSSTTEGLPIFLEERRTFMRETSRGAYRVSSYVLANTLVFLPFLLMGISYQRKKYLVTGFLCTT 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03008 462 Gene3D - 13 276 IPR027417 -
Trre12g03008 462 Pfam ABC transporter 51 201 IPR003439 GO:0005524
Trre12g03008 462 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 18 274 IPR003439 GO:0005524
Trre12g03008 462 Pfam ABC-2 type transporter 335 444 IPR013525 GO:0016020|GO:0140359
Trre12g03008 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 264 IPR027417 -
Trre12g03008 462 SMART AAA_5 60 251 IPR003593 GO:0016887
Trre12g03008 462 ProSitePatterns ABC transporters family signature. 173 187 IPR017871 GO:0005524|GO:0016887
Trre12g03008 462 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 15 444 - -
Trre12g03008 462 FunFam ABC transporter G family member 10 35 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03008 Trre-Chr12 43849815 43851408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03008 31 261 Calmodulin-binding Proteins AT2G36910 29.752 3.16e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03008 K05681 - gmx:100776372 727.628