Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02995 ATGGGTTGTGGGCTGTTTGCGTTCTTAGCCTGGCCTTGTTGTATCCGGTGTGGTGCGTTCTGTTCTGTGGGCTGTTTGTTTCTGGTTGGGGGTTTGTTTTACGGGTATGGTGGTTTGGTGGCCGTGTTTCCGGTGGTGGTTGGCAACAATATTGTTTACCAAATCAATGAAAATAGTAGAAATCCTGGCTACTTTGCTATCAATATTGTTTATGTTGGAGGAACTTATGATGTCAGTGCTGTTGAGATTTGGCAGAGGGAACAACATCAATGGGTGACCATGCGTAGGTCTTATGGGGCAGTATTTGACTTTGCTAACCCACCAAAAGGTGAAATCACATTGAGATTCCAAGTGAGTAGCAATATTGATGCCCGTCATGTGGTGTCAAGGTTCCCAATTCCTGCAGCTTGGAAAGCTGGTGCTACTTATTCCACCAAGATTCTGGCTTATTAA 453 0.4481 MGCGLFAFLAWPCCIRCGAFCSVGCLFLVGGLFYGYGGLVAVFPVVVGNNIVYQINENSRNPGYFAINIVYVGGTYDVSAVEIWQREQHQWVTMRRSYGAVFDFANPPKGEITLRFQVSSNIDARHVVSRFPIPAAWKAGATYSTKILAY 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02995 150 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 63 145 IPR007117 -
Trre12g02995 150 PANTHER EXPANSIN-B3 48 146 - -
Trre12g02995 150 Gene3D - 46 149 IPR036749 -
Trre12g02995 150 SUPERFAMILY PHL pollen allergen 50 144 IPR036749 -
Trre12g02995 150 Pfam Expansin C-terminal domain 53 129 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02995 Trre-Chr12 43719428 43723737 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02995 48 148 Expansin Gene Family AT4G17030 50.495 3.05e-29 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02995 - - psat:127074244 178.718