Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02985 ATGGAACATTTATGTGATGATAACTTTGAAGGATCTAATGAAGAACGACAGATTTTTACAGAAGTCTTTTTTGGTGATGATACTTTTCAGTCTAGTCAGAGGTGTGTTGTTTCTGGAGCCATCAACCTTGAACATGAATCCACTAAAAACACATTTAAATCAGTTGGCTCTAGTAATGAAAACTCGGTCATATTACGTCCCTCGTCTTCCAGATTTACACATCCTGAGGAGGACATTGTTCTAATTCAGCATTCCAATGAAACTGCTCTGGGGTGTTTGCCAGAGAGTTTAACTTGTGAAGACCAGAATGATGAGAATGTAAATGTCAAACGTATGAAGTTTTCTCTGCATGAACTTCCTTGTAGTAGATCTAATTCAGAAGATGTTTTGGGTTCATCTGGAATTCAAAAAGCAGTAATTTCCAACCTGCCGTGTGCTGCTACGAACTGTGATACTGACCCAATTGCATTTTGTACGGTTGAATCATCTAAACAGGGTGTGATATCTAGTTGCTGTCTATTGAAGCATAACTTGGTACATAATAAACATGCTTCTAATAATGACGTAGATGTTACAAATTGTAAATTTAAAACAGCAGATGGGAACATTGTAAAAGAGATCTCTGTAACTAAGGTAGTTGCTTCTCCTGTATCCCAGGAGAGTTCGGCAAACAGGCTAGTTGTAACGAGTCCATCAAACACTGTTGTGAAGAAGTCCGAGTCTCCTTTAAGAACTGAGGAAATGCCGGAAGAGTTTCAATCTTCTAATATGGTTATCTCAAAATCATTGTCAAAGCCAGGCAAAGAGGATCCCCGTCCCTTACTTCAGTTTCATATTGTGCAGATGCTTACGATGTTAGGATGGTCTATTGGGAAGCATCTACGGCCTTGTAGGCGGTGGATGGAGTCAGTCTACACAACACCAACCGGAAAAACTATTCGGGAATTTACAAAAGTTTGGAGGTTATGTGGCCAACAGTTGTCTGTTGAAAAATACAATATACCATATGGAGGCCGTAAGGAATGGACTGATATTAGGGATTTCTGGTCTGATCTTTCGAGTGCACTGACAAATGTTGAAAAATCAAAAACCCAGCAGCCAGAAACCGCTGATATGTTGGCCTATCAATGGTGGCTTTTAGATCCTTTTGTAGTAGTTATATATTTTGATAGAAAGATCGGTGCTCTGAAAAGGGGAGAGCTAATAATAAAAGCATCGTGTAGTTTATTTTATAATAAGTATAAAATGGCATATGCTCCAGTTGATTCAGCATGCGAGGACAGTTCTCGTGCTCATTCTGATCAAAAGCACGACCAAGCCATTTTCTGCAACTCTTCAACAGCCACCAGAACCACAGAAACATCTGCTTTTGTGATAAACAATCTTGTCTGTAATCAGAAATCTGATAGTATTCAAGAAGATGTGTATATTGGAGAACATAAACCAAACGTCATAGAAAATCGTTGTAGTGATATGTCAGTGGGCAGAAGTAGTATGGATCTAGTCTCCTTACCTGCTTGTGCATTGGGTAGCACCGTTACCCAATCCAGTGCTTCCTCATTCAATGTTCTTACAAGCTCTGGAAATTTGGACTTGGAATCTAAAGTGAATGCTGTTCATCAGAAAAGCTTTGATAAGCACACATCAGAAAATCAGTCTGAATGCAGTGAGGAAGAAGGGAGGAAGATCTCAATGACTTCTGTATTTGGGAAAGATAGTACATGGTCCTCCTATGATGGTGGTATTCTTAAAAAGAAAATGCGGAGGAAGTGCAAAAGGATATCTCAAATCAAACCGAGTATGTTATACCATAGTGACATACTGGGATCAACTATTACTGACCAGGTGCAGACGCTGAATGGTGATGCATGTGGCACTCAGGCTGGCTTGGAAGAAGTTCAGGATTATGTAGTTGACAGTGGGGGAAAAAAAAGGAACCACAGGCAGTTGACGGGTAGTGCAAACAAGCAACATATTAGGAAAACAAACTACTCTATTACTGAAAAAAATAAGTCCAAAAGATGCCATATTGAAGATGACGATCTATTAGTGTCAGCAATATTCAAGAATAAGGACTTCAACCCAAAGAAAGTTCGATGTAATTCTAGAGCTAAATCCGGCAAATCAAGTGGTTTGAGAAAGCTTAAAAGCAATAAAGGCCGTTGCAGGTTGCTACCAAGGAACCCTTGTAATGGTGGCAAACACAATAAGGATGGGAAGAAGTGTTATCTTGGGGAAAGGACTCTCTTGTCCTGGTTGATTGATAATGGGGTCGTATCTTTAAAAAATGTTATTCAATACCGAAATCCTAAAGATAATTCTGTCACTAAGGATGGTAGGATCACCAAAGATGGCATTGTTTGCAAGTGTTGTGGTAAGGTGTTTACATTGTCAGAGTTCAAGACTCATGCTGGGTTTACACTGAGTCGCCCTTGCTTGAATCTTTTCATGAAGTCTGGTGAGCCATTTACACTTCGCCTCCTTCAAGCTTGGTCAGCTGAATACAAATCCCGGAAAAGTCAAAATCAAGCTGTGAATGTTGTTGATAATGACAGAAATGATGACTCGTGCGGGTTGTGTGGTGAGGGAGGTGAGCTGATATGTTGTGATAACTGTCCGTCTACTTATCACCTGGCTTGTTTGTCCACTCAGGAGATCCCTGATGGCAACTGGTACTGCACAAACTGCACTTGTCGGATTTGTGGTAATTTGGTCATTGACAAAGAGGCTTCAGATACACATGATTCATTACAATGTTCACAATGCGAACATAAATATCACGAGAAATGCCTAGGAGAAGGAGATAAACAAGAAGGAGCAGTTTCAGAGACTTGGTTTTGTAGTCAGAGTTGTCAGGAGGTATACTCCAGTCTCCAATCTCAGGTAGGGCTAGTTAATCAAGTTGCTGATGGCTTCTCATGGACGCTTCTTAGATGCATACACGATGACCAAAAGGTTCATTCTGCTCAGTGGCTTGCCCTAAAGGCAGTATGCAATACAAAATTAGCTGTTGCACTTACCATCATGGAGGAGTGTTTTGTGTCAATGTTAGATCTAAGAACAGGCATCCACATGTTACCCCAAGTTTTATACAATTGGGGGTCTGATTTTGCTCGTCTGAATTTTCAAGGGTTTTACACCGTGGTGCTGGAGAAACAGGATGTATTAATATCTGTAGCATCTATCAGAGTGCATGGAACTTCAGTTGCAGAGATGCCTCTAATTGCAACTTGCAGTCGGTATCGCCGCCAAGGAATGTGCCGACGCCTTGTGAGCTCAATCGAAGAGATGTTAATGTCTGTCAAGGTAGAAAAGCTTGTGGTATCCGCCATTCCCGATCTGGTGGAGACATGGACCAAGGGCTTTGGTTTTGTACCTGTAGGTGACATTGAAAAGCGGAGATTAAAAAAACTCAACTTAATGGTTTTTCCTGGAACAGTGTTACTTGAAAAATCCTTGTATGGCAAGAAGAAAAATGAAGGGCTGTGTGATCAATCAACTTTAGCAACAGATGACTCGTTCAAAGTAGATATCTGTTCCAAAGAAATGGCAATAGCCGAATCATTGCCGCAAGATGCTGGGAATGTAACTGCCATTGAAGTTGGTGCTAAGTCAGAGTATGAACCTATCGACTGCAAAAATCAACTAGACAATAAGGCTGATTGTGAAACCAGCAGAGATGATAATACTCAAGCTGTTGAAATTGCTTTAGGAGGCAAAGAATCAACAGAGACATGTAGGTCTTTCAGTGAAGGGGAAATCACCCCTTTTGAAGGACACAATGTGCAGGAATTGAGAATATGCCACAACATGCAAATTGAGAACTCTTGTGCCAACAAAGATGGTACTGAATCAGGTGTAAGACTTGTTGAGGACAATAATATCGAAATAGGTGAAGTTGAGGAAAGTGCTTTGTTGCACGGACATGTTTCAAATGCGCCGTGCAAAACTTTTTCGGGCAACAATTTTGATGCAGTTTCTAATTTTGAATGCTCAGTGATGTATGATGAAACATCTATTTTTGGAACATTAGCAAACTCGGCAAAATCAATGGAAAGTTGA 4062 0.4047 MEHLCDDNFEGSNEERQIFTEVFFGDDTFQSSQRCVVSGAINLEHESTKNTFKSVGSSNENSVILRPSSSRFTHPEEDIVLIQHSNETALGCLPESLTCEDQNDENVNVKRMKFSLHELPCSRSNSEDVLGSSGIQKAVISNLPCAATNCDTDPIAFCTVESSKQGVISSCCLLKHNLVHNKHASNNDVDVTNCKFKTADGNIVKEISVTKVVASPVSQESSANRLVVTSPSNTVVKKSESPLRTEEMPEEFQSSNMVISKSLSKPGKEDPRPLLQFHIVQMLTMLGWSIGKHLRPCRRWMESVYTTPTGKTIREFTKVWRLCGQQLSVEKYNIPYGGRKEWTDIRDFWSDLSSALTNVEKSKTQQPETADMLAYQWWLLDPFVVVIYFDRKIGALKRGELIIKASCSLFYNKYKMAYAPVDSACEDSSRAHSDQKHDQAIFCNSSTATRTTETSAFVINNLVCNQKSDSIQEDVYIGEHKPNVIENRCSDMSVGRSSMDLVSLPACALGSTVTQSSASSFNVLTSSGNLDLESKVNAVHQKSFDKHTSENQSECSEEEGRKISMTSVFGKDSTWSSYDGGILKKKMRRKCKRISQIKPSMLYHSDILGSTITDQVQTLNGDACGTQAGLEEVQDYVVDSGGKKRNHRQLTGSANKQHIRKTNYSITEKNKSKRCHIEDDDLLVSAIFKNKDFNPKKVRCNSRAKSGKSSGLRKLKSNKGRCRLLPRNPCNGGKHNKDGKKCYLGERTLLSWLIDNGVVSLKNVIQYRNPKDNSVTKDGRITKDGIVCKCCGKVFTLSEFKTHAGFTLSRPCLNLFMKSGEPFTLRLLQAWSAEYKSRKSQNQAVNVVDNDRNDDSCGLCGEGGELICCDNCPSTYHLACLSTQEIPDGNWYCTNCTCRICGNLVIDKEASDTHDSLQCSQCEHKYHEKCLGEGDKQEGAVSETWFCSQSCQEVYSSLQSQVGLVNQVADGFSWTLLRCIHDDQKVHSAQWLALKAVCNTKLAVALTIMEECFVSMLDLRTGIHMLPQVLYNWGSDFARLNFQGFYTVVLEKQDVLISVASIRVHGTSVAEMPLIATCSRYRRQGMCRRLVSSIEEMLMSVKVEKLVVSAIPDLVETWTKGFGFVPVGDIEKRRLKKLNLMVFPGTVLLEKSLYGKKKNEGLCDQSTLATDDSFKVDICSKEMAIAESLPQDAGNVTAIEVGAKSEYEPIDCKNQLDNKADCETSRDDNTQAVEIALGGKESTETCRSFSEGEITPFEGHNVQELRICHNMQIENSCANKDGTESGVRLVEDNNIEIGEVEESALLHGHVSNAPCKTFSGNNFDAVSNFECSVMYDETSIFGTLANSAKSMES 1353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02985 1353 PANTHER PHD FINGER FAMILY PROTEIN 2 1282 - -
Trre12g02985 1353 CDD PHD_SF 897 949 - -
Trre12g02985 1353 SUPERFAMILY FYVE/PHD zinc finger 842 897 IPR011011 -
Trre12g02985 1353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 901 956 IPR013083 -
Trre12g02985 1353 SUPERFAMILY FYVE/PHD zinc finger 897 948 IPR011011 -
Trre12g02985 1353 SMART PHD_3 856 897 IPR001965 -
Trre12g02985 1353 SMART PHD_3 898 952 IPR001965 -
Trre12g02985 1353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 846 900 IPR013083 -
Trre12g02985 1353 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1005 1130 IPR016181 -
Trre12g02985 1353 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1004 1154 IPR000182 GO:0016747
Trre12g02985 1353 ProSiteProfiles Zinc finger PHD-type profile. 854 899 IPR019787 -
Trre12g02985 1353 Pfam Tify domain binding domain 779 824 IPR032308 -
Trre12g02985 1353 Gene3D - 1000 1138 - -
Trre12g02985 1353 CDD PHD2_CHD_II 856 896 - -
Trre12g02985 1353 Pfam PHD-finger 857 898 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02985 Trre-Chr12 43638353 43646904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02985 1 399 PHD Transcription Factor Family AT3G14980 32.668 8.35e-43 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre12g02985 TDBD 2.9e-16 No_clan