Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02982 ATGTCACATTCACCAGAAAAACCTGACTCAGAAAAACCCGAACCGGAGTTAGAATCTTTTTCCGATCGGTTTCGTGAAACGGTGAATTTAGAAGCAAACAAACCGGATTTCAGAGAACTCGATCTAGGTTCACCGGTTTCACCATTGAGGACACGTGGAGGACCGTCGGTGAGTAGTAGTTCTGGTTCTTCTGGATCTTTCTCTGGTCGAAATGGGTCAAACCCGGTTTCTAAAAGATCCGATTCAGCACCGAATAACAATAACAGTAACTCCGGTGAACTTTCCGGTTCTAGTGAGAACAGTCCAACCGCAGAGAGATCTGGTGGGAATGTAAGAGGTTCTAAACCGGGTCATTCAAGATCCAATTCAGGATCCGGTTTGACTCTGTTGACACATTCGGGTCAAACTGTGAACTCTCCGCCGTTGAATGTTCTTCCTACCGGAAACATTTGTCCTTCCGGTAGGATCTTGAAGACCGGTATGAAGGTACCAAATCGGAGTTCAAGAAGTGATGTTCTTGGTTCTGGAACTGGGAACTATGGTCATGGTAGCATAATGCGCGGTGGTGGCAGTGGTGCCGGAGTTGTTTCGGGTAAAGGAGAGAGTAACAGTTTGAGAAATAGCATTGGGGGTGATTTAGGAAAAAGAGGGGTGCAAGGTGTGGATCCAGAAGAGCTTAAGAAAGCAGGGAATGAGCATTACAAAAAGGGTCATTTTTCAGATGCATTGAGTCTTTATGACCGTGCAATTTCATTGTCGCCGACGAGTGCTTCTTATCGGAGCAACCGTGCTGCGGCGCTGACCGGTTTAGGGAGGTTAGCTGAAGCTGTTAAGGAATGTCAAGAGGCTGTTAGATTGGATCCTAATTATTCTAGAGCTCATCACCGATTGGCTTCACTTTTCATCAGGTTAGGACAAGTTGAGAATGCTAGGAAACATCTTTGTCATCCTAGATTGACGCCAGATCCGGCGGAGATGCAAAAGTTGAAAATGGTGGAAAAACATATTAATAAATGTGCAGATGTTAGGAGAGTAGGAGATTGGAAAAGTGTTTTGAGGGAACTTGATGCTGCTATTGCTGCTGGAGCCGATTCGTCTCCTCAGCTCTTTATGTGTAGAGCAGAAGCCCTATTGAAACTCCATCAAATTGATGATGCAGAATCAGTTTTGTCACGTGTTCCGAAATCGGAGCCACGTGCTAATAGTAATAATGCATCTTCTCAAGTAAGATTTTTCGGGATGCTTTCTGAAGCTTATTCCTATTTTGTCAGAGCTCAGATTGAGATGGCATTGGGAAGGTTTGAGAATGCAGTCACGGCTGCTGAGAAGGCGAGTCAGATTGATTCGCGAAATGTTGAAGTTTCTGTTTTGCTTAACAATGTAAGGATGGTGGCAAGAGCTCGAGTTCGTGGCAATGATCTTTTTAAATCGGAACGGTTCACTGAAGCTTGCTCTGCATACGGGGAAGGTTTGAGATTGGACCCTTCGAATTCTGTTCTATATTGTAATAGAGCAGCGTGTTGGTTTAAGCTTGGTCAATGGGAAAAATCAATTGAAGACTCTAATCAAGCTTTGCATATCCAACCAAATTATACAAAAGCTCTTCTTCGAAGGGCTACATCAAACAGCAAGCTAGAAAGGTGGGAAGAAGCGGTTAAAGATTATGAGGTCTTGCGAAAAGACCTTCCAAATGACAATGCAGTTGCTGAAGCTCTTTTTCATGCACAAGTTGCGCTTAAGAAATCTCGTGGAGAAGAAGTATCGAATTTAAAGTTCGGCGGTGAAGTGGAAGTAGTATCAGGTCTTGAGCAGTTTAGAACTGCAATATCTTTACCTGGTGTTTCTGTTGTCCATTTTGAAGTTGCATCAAATTCGCAATGCAAGCAAATATCACCATTTGTGGATACACTATGTAGTCGATATCCATCTATTAACTTCCTCAAGGTGGACATTCAAGAAAACCCGACAGTTGCAACTGCAGAGAACGTTAGAATTGTGCCAACCTTCAAGATATACAAAAATGGAAGCCGTGTGAAGGAAATCATATGCCCTAGTCGCGACATGTTGGAACACTCTGTGAGGCATTACAGCATTTAG 2097 0.4354 MSHSPEKPDSEKPEPELESFSDRFRETVNLEANKPDFRELDLGSPVSPLRTRGGPSVSSSSGSSGSFSGRNGSNPVSKRSDSAPNNNNSNSGELSGSSENSPTAERSGGNVRGSKPGHSRSNSGSGLTLLTHSGQTVNSPPLNVLPTGNICPSGRILKTGMKVPNRSSRSDVLGSGTGNYGHGSIMRGGGSGAGVVSGKGESNSLRNSIGGDLGKRGVQGVDPEELKKAGNEHYKKGHFSDALSLYDRAISLSPTSASYRSNRAAALTGLGRLAEAVKECQEAVRLDPNYSRAHHRLASLFIRLGQVENARKHLCHPRLTPDPAEMQKLKMVEKHINKCADVRRVGDWKSVLRELDAAIAAGADSSPQLFMCRAEALLKLHQIDDAESVLSRVPKSEPRANSNNASSQVRFFGMLSEAYSYFVRAQIEMALGRFENAVTAAEKASQIDSRNVEVSVLLNNVRMVARARVRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWEKSIEDSNQALHIQPNYTKALLRRATSNSKLERWEEAVKDYEVLRKDLPNDNAVAEALFHAQVALKKSRGEEVSNLKFGGEVEVVSGLEQFRTAISLPGVSVVHFEVASNSQCKQISPFVDTLCSRYPSINFLKVDIQENPTVATAENVRIVPTFKIYKNGSRVKEIICPSRDMLEHSVRHYSI 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02982 698 MobiDBLite consensus disorder prediction 1 177 - -
Trre12g02982 698 Gene3D Tetratricopeptide repeat domain 221 584 IPR011990 GO:0005515
Trre12g02982 698 ProSiteProfiles TPR repeat profile. 223 256 IPR019734 GO:0005515
Trre12g02982 698 SUPERFAMILY Thioredoxin-like 501 696 IPR036249 -
Trre12g02982 698 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 27 695 IPR044534 -
Trre12g02982 698 CDD TRX_family 603 690 - -
Trre12g02982 698 MobiDBLite consensus disorder prediction 191 219 - -
Trre12g02982 698 MobiDBLite consensus disorder prediction 51 146 - -
Trre12g02982 698 Pfam Tetratricopeptide repeat 534 564 IPR019734 GO:0005515
Trre12g02982 698 SUPERFAMILY TPR-like 223 453 IPR011990 GO:0005515
Trre12g02982 698 SMART tpr_5 257 290 IPR019734 GO:0005515
Trre12g02982 698 SMART tpr_5 498 531 IPR019734 GO:0005515
Trre12g02982 698 SMART tpr_5 532 565 IPR019734 GO:0005515
Trre12g02982 698 SMART tpr_5 223 256 IPR019734 GO:0005515
Trre12g02982 698 SMART tpr_5 367 400 IPR019734 GO:0005515
Trre12g02982 698 SMART tpr_5 418 451 IPR019734 GO:0005515
Trre12g02982 698 SMART tpr_5 464 497 IPR019734 GO:0005515
Trre12g02982 698 MobiDBLite consensus disorder prediction 1 38 - -
Trre12g02982 698 Pfam Tetratricopeptide repeat 419 449 IPR019734 GO:0005515
Trre12g02982 698 Pfam Thioredoxin 603 686 IPR013766 -
Trre12g02982 698 ProSiteProfiles TPR repeat profile. 498 531 IPR019734 GO:0005515
Trre12g02982 698 MobiDBLite consensus disorder prediction 163 177 - -
Trre12g02982 698 Gene3D Glutaredoxin 591 697 - -
Trre12g02982 698 FunFam TPR repeat-containing thioredoxin TTL4 590 697 - -
Trre12g02982 698 Pfam Tetratricopeptide repeat 229 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02982 Trre-Chr12 43538017 43541042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02982 463 608 U-box Gene Family AT3G07370 28.962 4.13e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02982 - - gmx:100795358 989.564