Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02978 ATGTTACAACAACCGCAACCACCGCCTCTTCCCGCCGTCAGGGCACGCTGCGCCGGTTGCCGGACATACTTTCACGCGGCGCAAGGTGTAACAGAGTTACCATGTCCTAACTGTCAAATGCCACACGTTTTCTCAAGCGATCCCGCTGCTATTCGCTGTCCCGCTTGTAAAGCTCTCGTTAACGGACCTAGTAACCTCGCGAAGTTCCCTTGTCCTCAGTGTCGCGTTGAACTCGATCTTCATGTTGATGGTGAAGACGTCAATGAGCTGCTTAATGAGGTGGAGCAAGATGAAGATGATGGTGGTATGGCTGGAGAAACATTTACAGATTACCGGCCAGCAAAGCTATCTATCGGACCTCCACACCCAGATCCGATTGTGGAAACATCTTCCTTGTCTGCAGTGCAACCACCTGAGCCTACTTATGATCCAAAGATTAAGGATGAGTTGCAATGTTTGAAGACTTTGTCATGCTTGCAGATTGAGACTTTGGTCTATGCTTGTCAGAGACACCTTCAACACATTCAAAATGGTGCTAGGGCTGGATTCTTTATTGGAGATGGAGCGGGTGTAGGCAAAGGTCGAACAGTTGCTGGGCTGATCTGGGAGAACTGGCACCATGAGAGGAAGAAAGCCTTGTGGATTTCTGTTGGTTCCGACTTGAAGTTTGATGCCAGGAGAGATTTGGATGATATGGGTGCAAGTTGCATCAAAGTGCATGCTTTGAACAAGCTTCCTTATTCGAAGCTTGACACGAAGAGTGTTGGAGTTAAGGAGGGAGTTATTTTCTTGACATACAGTAGCCTCATAGCATCATCTGACAAAGGCCGTTCCCGTATGCAACAGCTTGTGCACTGGTGTGGACCTAAGTTTGACGGTCTTATAATTTTTGATGAGTGTCATAAAGCAAAAAATTTGGTTCCCGAAAAGGGTAAGCAGCCAACAAGAACCGGTGAAGCAGTACTTGATATCCAGGCTCAACTACCTGAAGCTCGTGTTGTGTATTGCTCAGCTACTGGTGCATCTGAACCTCGCAATATGGCTTATATGGTTCGACTTGGCCTCTGGGGAGATGGGACCTATTTTCGTGATTTTGGTGATTTTCTAGGTGCTCTTGAAAAAGGGGGTGTTGGAGCTCTAGAGCTAGTTGCAATGGACATGAAAGCAAGGGGCATGTATTTATGTCGCACGCTTAGCTACAAGGGTGCTGAATTTGAAATTGTTGAAGCAACATTAGACGATAAAATGATGAATGCGTATAAAAAGGCTACAGAAGTTTGGGTGGATTTGCGTGAGAAATTGCTTTCTGCCATTGCCCTCCTACCCGAGAAACCTAATACTAGACTACTATGGAGATTATACTGGGCAACCCACCAGCGATTCTTTAGACACTTATGTATGTCTGCTAAAGTCCCAAGTGCAGTGAGACTTGTGAAACAAGCATTAAGGGAAGACAAGTGCGTAGTCATCGGTCTGCAGAGTACCGGTGAAGCAAGGACGGAGGATGCTGTTTCAAAATATGGCTCTGAACTTGATGACTTTATATCTGGACCTCGTGAGTTAATGCTAAAATATGTTGAAGATTATTACCCTTTGCCAAAAAAGCCTGAACTTCTCCCAGATGATGGTGTAAAGGAGCTTCAAAGGAAGAGGCACTCTGCAAGTCCTGATGTTTCAGGACAATCTAGAGCCAGAAAAGTGGCCAAGAGGCCGAATCTTAGTGATGCTGACAGTGATGAAGAATCTGAAACTGCCTCTGATGTTGAATCTTCCGACTCTGATTATGATGAGTTTCAGAAATGTGAAATTTGCAGTAATGAAGAGGAAAGGGAAAACTTGTTGCAGTGTTCCCTCTGTGGAAAATACGCTCACCAATCATGCATGGTGCCCCCAATTGGCGATATTATTCTTAAGGAATGGGCATGTAATTTGTGCAAGAATAAAACTGTTGAATATCTCCCTCCTAGAACAAACATAATTGAACAGCAGAAGAGTTATGATACAGCCATCGATAGCAAGAAAAAAATATTAGAGACGATCCGTGCTTTGGATCTTCCAAACAATCCCTTGGATGATATTATTGACCAGTTAGGAGGCCATGACAAGGTTGCAGAAATTACAGGAAGGAAAGGAATGCTTGTGAGGGCTCCTAGTGGAATGGGTGTGGTTTATCAGGCTCGAAATACAAAAGATGTCACTGCTGAGATGGTCAACATGAATGAAAAAAAGCTCTTTATGGAAGGTAAGAAGTTAGTGGCTATCATCTCTGAAGCTGGATCAGCTGGCGTTTCGTTGCAGGCAGACAGAAGAGTGAGAAATCAGAAAAGAAGGGTTCATTTAACTCTAGAACTTCCATGGAGTGCCGATCGAGCAATTCAGCAGTTTGGAAGAACTCATAGATCAAATCAAGTCTCAGCACCAGAATACAGGTTACTATTTACCAACCTTGGTGGAGAACGCCGGTTTGCATCAGCTGTTGCTAAGAGATTAGAATCCCTTGGAGCTTTGACTCAAGGGGATCGAAGGGCTGGACCTTCATTAAGTGCATATAATTATGATAGTGCTTACGGGAAGCGAGCTCTGATGGTTTTGTACAGAGGAATAATGGAGCTGGATCCTCTTCCCGTTGTACCTCCGGGATGCTTATCTGACAGACCCGATACAATCAAACGTTTTATTATGCAAGCAAAAGCTGCTCTTGCTTCTGTTGCAATTTTTAAGGACGCCAATCTTGGAGATGATATAGATCCTAGATGGTTATCTTGCCACATTGATGATAAAGATATCCATGATATTGGACGATTTCTCAACCGGATTTTGGGCATAGCTCCTGAGACTCAGAATAGGTTATTTGAGTTATTTGTGAAAATCTTGGATCTTCTTGTTCAAAAAGCTCGCATTGAAGGTAATCTTGACACAGGCATTGTTGACTTGAAAGCTAATGTCATTAAACTGAAAGGGACTCCAAAGAATGTCTATGTTGATCAAATGAGCGGGGCTTCAACTGTTCTGTACACATTCATCTTGGATCGTGGGGTTTCATGGGAGTTGGCAAATACCATGCTGAATGAGAAGCAGAACGCTGGATTTGGTTCATCCAGTGATGGCTTCTACAAGTCCAAGAGGGAGTGGTTGGGAAAACGTCATGTTATTTTAGCATTTGAAAGTTCTGCTCCGGCTATGTATAAGATAGTTCGTCCCACTACCGGTGAATCACCTCGGGATATGCATCTGGCAGAATTAAATAGAAAATATTCAAAAGTTTCATCTTTAGAGGCGGCCAAAATTGGTTGGGAGGACGACTATGAAGCTTCATCTAAACGGTGCATGCATGGTCCAAACTGTAAACTCGGTAAATTCTGTTCAGTTGGCTCAAGACTACAGGAAGTAAATGTCTTAGGTGGTGTCATTCTTCCTGTTTGGGGAAAAATACAGATGGCTCTTTCTAAGCAGGTCCGACAAATTCATAAGAGGTTACGCATTGTTCGTGTTGAAACTACATCAGATAACAGACAAATAGTTGGGCTTCTTGTACCTAATGCAGCAGTTGATACTGTGCTTGAAGGTTTACATTGGCCTATAGAACTGGATGATTGA 3597 0.4365 MLQQPQPPPLPAVRARCAGCRTYFHAAQGVTELPCPNCQMPHVFSSDPAAIRCPACKALVNGPSNLAKFPCPQCRVELDLHVDGEDVNELLNEVEQDEDDGGMAGETFTDYRPAKLSIGPPHPDPIVETSSLSAVQPPEPTYDPKIKDELQCLKTLSCLQIETLVYACQRHLQHIQNGARAGFFIGDGAGVGKGRTVAGLIWENWHHERKKALWISVGSDLKFDARRDLDDMGASCIKVHALNKLPYSKLDTKSVGVKEGVIFLTYSSLIASSDKGRSRMQQLVHWCGPKFDGLIIFDECHKAKNLVPEKGKQPTRTGEAVLDIQAQLPEARVVYCSATGASEPRNMAYMVRLGLWGDGTYFRDFGDFLGALEKGGVGALELVAMDMKARGMYLCRTLSYKGAEFEIVEATLDDKMMNAYKKATEVWVDLREKLLSAIALLPEKPNTRLLWRLYWATHQRFFRHLCMSAKVPSAVRLVKQALREDKCVVIGLQSTGEARTEDAVSKYGSELDDFISGPRELMLKYVEDYYPLPKKPELLPDDGVKELQRKRHSASPDVSGQSRARKVAKRPNLSDADSDEESETASDVESSDSDYDEFQKCEICSNEEERENLLQCSLCGKYAHQSCMVPPIGDIILKEWACNLCKNKTVEYLPPRTNIIEQQKSYDTAIDSKKKILETIRALDLPNNPLDDIIDQLGGHDKVAEITGRKGMLVRAPSGMGVVYQARNTKDVTAEMVNMNEKKLFMEGKKLVAIISEAGSAGVSLQADRRVRNQKRRVHLTLELPWSADRAIQQFGRTHRSNQVSAPEYRLLFTNLGGERRFASAVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKRALMVLYRGIMELDPLPVVPPGCLSDRPDTIKRFIMQAKAALASVAIFKDANLGDDIDPRWLSCHIDDKDIHDIGRFLNRILGIAPETQNRLFELFVKILDLLVQKARIEGNLDTGIVDLKANVIKLKGTPKNVYVDQMSGASTVLYTFILDRGVSWELANTMLNEKQNAGFGSSSDGFYKSKREWLGKRHVILAFESSAPAMYKIVRPTTGESPRDMHLAELNRKYSKVSSLEAAKIGWEDDYEASSKRCMHGPNCKLGKFCSVGSRLQEVNVLGGVILPVWGKIQMALSKQVRQIHKRLRIVRVETTSDNRQIVGLLVPNAAVDTVLEGLHWPIELDD 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02978 1198 PANTHER STRAWBERRY NOTCH-RELATED 62 1191 IPR026741 GO:0006355
Trre12g02978 1198 MobiDBLite consensus disorder prediction 546 593 - -
Trre12g02978 1198 ProSiteProfiles Zinc finger PHD-type profile. 598 648 IPR019787 -
Trre12g02978 1198 CDD PHD_SF 601 645 - -
Trre12g02978 1198 Pfam P-loop containing NTP hydrolase pore-1 121 421 IPR039187 -
Trre12g02978 1198 SMART PHD_3 600 646 IPR001965 -
Trre12g02978 1198 FunFam Protein strawberry notch homolog 2 153 352 - -
Trre12g02978 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 743 848 IPR027417 -
Trre12g02978 1198 MobiDBLite consensus disorder prediction 578 592 - -
Trre12g02978 1198 SUPERFAMILY FYVE/PHD zinc finger 587 650 IPR011011 -
Trre12g02978 1198 Pfam PHD-finger 601 648 IPR019787 -
Trre12g02978 1198 Pfam C-terminal domain on Strawberry notch homologue 688 977 IPR026937 -
Trre12g02978 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 364 IPR027417 -
Trre12g02978 1198 Gene3D - 156 352 IPR027417 -
Trre12g02978 1198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 545 653 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02978 Trre-Chr12 43395155 43411842 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre12g02978 AAA_34 4.1e-132 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02978 K26273 - gmx:100808670 1796.56