Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02977 ATGTTACAACAACCGCAACCACCGCCTCTTCCCGCCGTCAGGGCACGCTGCGCCGGTTGCCGGACATACTTTCACGCGGCGCAAGGTGTAACAGAGTTACCATGTCCTAACTGTCAAATGCCACACGTTTTCTCAAGCGATCCCGCTGCTATTCGCTGTCCCGCTTGTAAAGCTCTCGTTAACGGACCTAGTAACCTCGCGAAGTTCCCTTGTCCTCAGTGTCGCGTTGAACTCGATCTTCATGTTGATGGTGAAGACGTCAATGAGCTGCTTAATGAGGTGGAGCAAGATGAAGATGATGGTGGTATGGCTGGAGAAACATTTACAGATTACCGGCCAGCAAAGCTATCTATCGGACCTCCACACCCAGATCCGATTGTGGAAACATCTTCCTTGTCTGCAGTGCAACCACCTGAGCCTACTTATGATCCAAAGATTAAGGATGAGTTGCAATGTTTGAAGACTTTGTCATGCTTGCAGATTGAGACTTTGGTCTATGCTTGTCAGAGACACCTTCAACACATTCAAAATGGTGCTAGGGCTGGATTCTTTATTGGAGATGGAGCGGGTGTAGGCAAAGGTCGAACAGTTGCTGGGCTGATCTGGGAGAACTGGCACCATGAGAGGAAGAAAGCCTTGTGGATTTCTGTTGGTTCCGACTTGAAGTTTGATGCCAGGAGAGATTTGGATGATATGGGTGCAAGTTGCATCAAAGTGCATGCTTTGAACAAGCTTCCTTATTCGAAGCTTGACACGAAGAGTGTTGGAGTTAAGGAGGGAGTTATTTTCTTGACATACAGTAGCCTCATAGCATCATCTGACAAAGGCCGTTCCCGTATGCAACAGCTTGTGCACTGGTGTGGACCTAAGTTTGACGGTCTTATAATTTTTGATGAGTGTCATAAAGCAAAAAATTTGGTTCCCGAAAAGGGTAAGCAGCCAACAAGAACCGGTGAAGCAGTACTTGATATCCAGGCTCAACTACCTGAAGCTCGTGTTGTGTATTGCTCAGCTACTGGTGCATCTGAACCTCGCAATATGGCTTATATGGTTCGACTTGGCCTCTGGGGAGATGGGACCTATTTTCGTGATTTTGGTGATTTTCTAGGTGCTCTTGAAAAAGGGGGTGTTGGAGCTCTAGAGCTAGTTGCAATGGACATGAAAGCAAGGGGCATGTATTTATGTCGCACGCTTAGCTACAAGGGTGCTGAATTTGAAATTGTTGAAGCAACATTAGACGATAAAATGATGAATGCGTATAAAAAGGCTACAGAAGTTTGGGTGGATTTGCGTGAGAAATTGCTTTCTGCCATTGCCCTCCTACCCGAGAAACCTAATACTAGACTACTATGGAGATTATACTGGGCAACCCACCAGCGATTCTTTAGACACTTATGTATGTCTGCTAAAGTCCCAAGTGCAGTGAGACTTGTGAAACAAGCATTAAGGGAAGACAAGTGCGTAGTCATCGGTCTGCAGAGTACCGGTGAAGCAAGGACGGAGGATGCTGTTTCAAAATATGGCTCTGAACTTGATGACTTTATATCTGGACCTCGTGAGTTAATGCTAAAATATGTTGAAGATTATTACCCTTTGCCAAAAAAGCCTGAACTTCTCCCAGATGATGGTGTAAAGGAGCTTCAAAGGAAGAGGCACTCTGCAAGTCCTGATGTTTCAGGACAATCTAGAGCCAGAAAAGTGGCCAAGAGGCCGAATCTTAGTGATGCTGACAGTGATGAAGAATCTGAAACTGCCTCAGTTCCCGAATCTTCTGATTCTGATTACGGACCAGAAGGGGATGAAAGTGCTGCCTCTGATGTTGAATCTTCCGACTCTGATTATGATGAGTTTCAGAAATGTGAAATTTGCAGTAATGAAGAGGAAAGGGAAAACTTGTTGCAGTGTTCCCTCTGTGGAAAATACGCTCACCAATCATGCATGGTGCCCCCAATTGGCGATATTATTCTTAAGGAATGGGCATGTAATTTGTGCAAGAATAAAACTGTTGAATATCTCCCTCCTAGAACAAACATAATTGAACAGCAGAAGAGTTATGATACAGCCATCGATAGCAAGAAAAAAATATTAGAGACGATCCGTGCTTTGGATCTTCCAAACAATCCCTTGGATGATATTATTGACCAGTTAGGAGGCCATGACAAGGTTGCAGAAATTACAGGAAGGAAAGGAATGCTTGTGAGGGCTCCTAGTGGAATGGGTGTGGTTTATCAGGCTCGAAATACAAAAGATGTCACTGCTGAGATGGTCAACATGAATGAAAAAAAGCTCTTTATGGAAGGTAAGAAGTTAGTGGCTATCATCTCTGAAGCTGGATCAGCTGGCGTTTCGTTGCAGGCAGACAGAAGAGTGAGAAATCAGAAAAGAAGGGTTCATTTAACTCTAGAACTTCCATGGAGTGCCGATCGAGCAATTCAGCAGTTTGGAAGAACTCATAGATCAAATCAAGTCTCAGCACCAGAATACAGGTTACTATTTACCAACCTTGGTGGAGAACGCCGGTTTGCATCAGCTGTTGCTAAGAGATTAGAATCCCTTGGAGCTTTGACTCAAGGGGATCGAAGGGCTGGACCTTCATTAAGTGCATATAATTATGATAGTGCTTACGGGAAGCGAGCTCTGATGGTTTTGTACAGAGGAATAATGGAGCTGGATCCTCTTCCCGTTGTACCTCCGGGATGCTTATCTGACAGACCCGATACAATCAAACGTTTTATTATGCAAGCAAAAGCTGCTCTTGCTTCTGTTGCAATTTTTAAGGACGCCAATCTTGGAGATGATATAGATCCTAGATGGTTATCTTGCCACATTGATGATAAAGATATCCATGATATTGGACGATTTCTCAACCGGATTTTGGGCATAGCTCCTGAGACTCAGAATAGGTTATTTGAGTTATTTGTGAAAATCTTGGATCTTCTTGTTCAAAAAGCTCGCATTGAAGGTAATCTTGACACAGGCATTGTTGACTTGAAAGCTAATGTCATTAAACTGAAAGGGACTCCAAAGAATGTCTATGTTGATCAAATGAGCGGGGCTTCAACTGTTCTGTACACATTCATCTTGGATCGTGGGGTTTCATGGGAGTTGGCAAATACCATGCTGAATGAGAAGCAGAACGCTGGATTTGGTTCATCCAGTGATGGCTTCTACAAGTCCAAGAGGGAGTGGTTGGGAAAACGTCATGTTATTTTAGCATTTGAAAGTTCTGCTCCGGCTATGTATAAGATAGTTCGTCCCACTACCGGTGAATCACCTCGGGATATGCATCTGGCAGAATTAAATAGAAAATATTCAAAAGTTTCATCTTTAGAGGCGGCCAAAATTGGTTGGGAGGACGACTATGAAGCTTCATCTAAACGGTGCATGCATGGTCCAAACTGTAAACTCGGTAAATTCTGTTCAGTTGGCTCAAGACTACAGGAAGTAAATGTCTTAGGTGGTGTCATTCTTCCTGTTTGGGGAAAAATACAGATGGCTCTTTCTAAGCAGGTCCGACAAATTCATAAGAGGTTACGCATTGTTCGTGTTGAAACTACATCAGATAACAGACAAATAGTTGGGCTTCTTGTACCTAATGCAGCAGTTGATACTGTGCTTGAAGGTTTACATTGGCCTATAGAACTGGATGATTGA 3654 0.4373 MLQQPQPPPLPAVRARCAGCRTYFHAAQGVTELPCPNCQMPHVFSSDPAAIRCPACKALVNGPSNLAKFPCPQCRVELDLHVDGEDVNELLNEVEQDEDDGGMAGETFTDYRPAKLSIGPPHPDPIVETSSLSAVQPPEPTYDPKIKDELQCLKTLSCLQIETLVYACQRHLQHIQNGARAGFFIGDGAGVGKGRTVAGLIWENWHHERKKALWISVGSDLKFDARRDLDDMGASCIKVHALNKLPYSKLDTKSVGVKEGVIFLTYSSLIASSDKGRSRMQQLVHWCGPKFDGLIIFDECHKAKNLVPEKGKQPTRTGEAVLDIQAQLPEARVVYCSATGASEPRNMAYMVRLGLWGDGTYFRDFGDFLGALEKGGVGALELVAMDMKARGMYLCRTLSYKGAEFEIVEATLDDKMMNAYKKATEVWVDLREKLLSAIALLPEKPNTRLLWRLYWATHQRFFRHLCMSAKVPSAVRLVKQALREDKCVVIGLQSTGEARTEDAVSKYGSELDDFISGPRELMLKYVEDYYPLPKKPELLPDDGVKELQRKRHSASPDVSGQSRARKVAKRPNLSDADSDEESETASVPESSDSDYGPEGDESAASDVESSDSDYDEFQKCEICSNEEERENLLQCSLCGKYAHQSCMVPPIGDIILKEWACNLCKNKTVEYLPPRTNIIEQQKSYDTAIDSKKKILETIRALDLPNNPLDDIIDQLGGHDKVAEITGRKGMLVRAPSGMGVVYQARNTKDVTAEMVNMNEKKLFMEGKKLVAIISEAGSAGVSLQADRRVRNQKRRVHLTLELPWSADRAIQQFGRTHRSNQVSAPEYRLLFTNLGGERRFASAVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKRALMVLYRGIMELDPLPVVPPGCLSDRPDTIKRFIMQAKAALASVAIFKDANLGDDIDPRWLSCHIDDKDIHDIGRFLNRILGIAPETQNRLFELFVKILDLLVQKARIEGNLDTGIVDLKANVIKLKGTPKNVYVDQMSGASTVLYTFILDRGVSWELANTMLNEKQNAGFGSSSDGFYKSKREWLGKRHVILAFESSAPAMYKIVRPTTGESPRDMHLAELNRKYSKVSSLEAAKIGWEDDYEASSKRCMHGPNCKLGKFCSVGSRLQEVNVLGGVILPVWGKIQMALSKQVRQIHKRLRIVRVETTSDNRQIVGLLVPNAAVDTVLEGLHWPIELDD 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02977 1217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 563 672 IPR013083 -
Trre12g02977 1217 SMART PHD_3 619 665 IPR001965 -
Trre12g02977 1217 MobiDBLite consensus disorder prediction 546 613 - -
Trre12g02977 1217 Pfam C-terminal domain on Strawberry notch homologue 707 996 IPR026937 -
Trre12g02977 1217 Pfam PHD-finger 620 667 IPR019787 -
Trre12g02977 1217 Pfam P-loop containing NTP hydrolase pore-1 121 421 IPR039187 -
Trre12g02977 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 762 867 IPR027417 -
Trre12g02977 1217 CDD PHD_SF 620 664 - -
Trre12g02977 1217 SUPERFAMILY FYVE/PHD zinc finger 606 669 IPR011011 -
Trre12g02977 1217 FunFam Protein strawberry notch homolog 2 153 352 - -
Trre12g02977 1217 ProSiteProfiles Zinc finger PHD-type profile. 617 667 IPR019787 -
Trre12g02977 1217 PANTHER STRAWBERRY NOTCH-RELATED 62 1210 IPR026741 GO:0006355
Trre12g02977 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 364 IPR027417 -
Trre12g02977 1217 MobiDBLite consensus disorder prediction 594 611 - -
Trre12g02977 1217 Gene3D - 156 352 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02977 Trre-Chr12 43395155 43411842 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre12g02977 AAA_34 4.2e-132 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02977 K26273 - gmx:100808670 1787.31