Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02973 ATGGCTCCAATGACTCTACCACCTGGATTCAGGTTCCACCCTACAGATGAAGAGCTCGTGGCTTACTACTTAGAAAGAAAAATAACAGGTAAAACTATAGAGCTTGATATCATTGCAGAAGTTGATCTCTACAAATGTGAACCTTGGGATTTACCAGAAAAATCATTTCTTCCAAGCAAGGACATGGAGTGGTATTTTTATAGTCCAAGAGATAGAAAGTATCCAAATGGATCAAGAACAAATAGAGCAACAAGAGGTGGTTATTGGAAAGCAACTGGAAAAGATAGGGCAGTGAATTCTCAAAAGAGACAAGTTGGAATGAAGAAGACACTTGTTTATTACAAAGGTAGAGCACCTCATGGGATTAGAACCAATTGGGTTATGCATGAATATCGTCTCATGGAATCACATCCTGGTGCTTCTCTCTCTTCTTTGAAGGATTCCTATTCGTTGTGTCGAATTTTCAAGAAGACAATTCAAATTCCAGCAAAAAATAACGACGAACAAGTTGAGGAAACAAAGAAGGAAATGATGTTAGAAGAACAATTGCAAGGGGAAGACTCAAGTAGCACTGAGAATTCAAGTGAAATAATGGAAACTATGAATAAAAAAGTTGTTAATCAAGATGAAAATCCAAAATTTCCATGTGATGCTTCTTCTTCTGATGTCACTCAAGGAACATGTACACCAACAAATACATGTAATAATATAACAGATGATTTTCATGCACAATTTGCTTGTGATGAAGCAAATAGTTCAGCTATTTCTTATCCATTTGGAATTGGCTACCCCTCAAACTTATTTCAGGATATAGAAATACCTATATATGGTGCTTTTCATAATCAATTTCCACAAACACCTTTTATGATGGAAGATTTCCCACAAATTGAGACAAAGTCAATATTGAAGCATGATATGACTAATGATAACTGCTTTTTGTATGACAAATATAGAGACTGTATGAATGGAACACTAGAAGAAATCATCTCTTTATGTTCCTCTCAAGATCATTCTTTGGCTTTTCCTATGCTATAG 1035 0.3536 MAPMTLPPGFRFHPTDEELVAYYLERKITGKTIELDIIAEVDLYKCEPWDLPEKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRGGYWKATGKDRAVNSQKRQVGMKKTLVYYKGRAPHGIRTNWVMHEYRLMESHPGASLSSLKDSYSLCRIFKKTIQIPAKNNDEQVEETKKEMMLEEQLQGEDSSSTENSSEIMETMNKKVVNQDENPKFPCDASSSDVTQGTCTPTNTCNNITDDFHAQFACDEANSSAISYPFGIGYPSNLFQDIEIPIYGAFHNQFPQTPFMMEDFPQIETKSILKHDMTNDNCFLYDKYRDCMNGTLEEIISLCSSQDHSLAFPML 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02973 344 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Trre12g02973 344 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Trre12g02973 344 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 211 - -
Trre12g02973 344 FunFam Nac domain-containing protein 86 15 160 - -
Trre12g02973 344 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Trre12g02973 344 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02973 Trre-Chr12 43300027 43305808 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02973 1 339 NAC Transcription Factor Family AT1G54330 49.853 3.85e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre12g02973 NAM 4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02973 - - gmx:100808325 526.939