Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02956 ATGGAAAGAATGTTCCCTCCAAAGAAGCCTTCAACTATGAATTCACATGATAGACCCATGTGTGTTCAAGGTGACTCGGGACTTGTTCTTACCACTGACCCGAAACCTCGTCTTCGATGGACTGTTGAACTCCATGAACGTTTTGTTGATGCTGTTACTCAGCTTGGAGGACCTGATAAGGCCACTCCTAAAACTATCATGAGGGTTATGGGTGTCAAAGGTCTCACCCTTTACCATCTCAAGAGCCATCTTCAGAAATTTAGGCTTGGAAAGCAACCCCACAAGGAATTCAATGATCACTCGATTAAGGATGGTATGAGAGCTACAGCTTTAGAATTGCAACGAAATACTGCTTCCTCTTCTGCCATGATTGGCCGGAACATGAATGAGATGCAAATTGAGGTGCAGAGAAGACTTCATGAACAGCTTGAGGTGCAAAAACACCTTCAACTAAGGATTGAAGCTCAAGGGAAATACATGCAAAGTATATTGGAGAAGGCTTATCAAACCCTTGCCGGCGAAAACATGGCATCGGCTGCAACTAACCTAAAAGGTGTTGTCGTTGGACCTCAAGGAATACCTGAAATGGGACTATTGAAAGAATTTAGTTCTCCTCTTAGTTTCTCATCTTTTCAAGATCTTGATCTTTTTGGAGGAGGTGGAGGTGATCAACTTGACCTTCAACAAAACATGGAAAAACAAACCCTAAATCATCATGGATTTATGCAAATCAATGAGAATTTATGTCTTGGAAAGAAGAGGCCAAACCCTAACTCTAACCCTTATAGTGGAAATGGAAAGAGTCCTTTAATGTGGAGTGATGATTTAAGGCTTCAAGATTTAGGAACACCTTCATCATGCTTAGATGATCCTTTCAAAGGTGAGCAAATTCAAATTGCACCACCATCAATGGATAGAGGAAGTGATATTGAAACTATAGATATTTATGATACAAAGCCTTTACTTCAAGGTGATATTTTAAGTGAAAAGAAATTTGATGCAATGAATAAACTTGAAAGGCCATCACCAAGAAGAGGGCCACTTCATGCTGAAAGAATGAGTCCTATGATTAGTACCGGTACTATGGCACAAGGTAGAGGTTCACCATTTGGATGA 1116 0.405 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRATALELQRNTASSSAMIGRNMNEMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASAATNLKGVVVGPQGIPEMGLLKEFSSPLSFSSFQDLDLFGGGGGDQLDLQQNMEKQTLNHHGFMQINENLCLGKKRPNPNSNPYSGNGKSPLMWSDDLRLQDLGTPSSCLDDPFKGEQIQIAPPSMDRGSDIETIDIYDTKPLLQGDILSEKKFDAMNKLERPSPRRGPLHAERMSPMISTGTMAQGRGSPFG 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02956 371 MobiDBLite consensus disorder prediction 1 20 - -
Trre12g02956 371 Gene3D - 34 92 - -
Trre12g02956 371 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 257 IPR044848 GO:0003700
Trre12g02956 371 FunFam Myb family transcription factor 34 92 - -
Trre12g02956 371 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Trre12g02956 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Trre12g02956 371 Pfam MYB-CC type transfactor, LHEQLE motif 131 170 IPR025756 -
Trre12g02956 371 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Trre12g02956 371 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02956 Trre-Chr12 42894551 42896614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02956 4 371 G2-like Transcription Factor Family AT1G79430 58.839 1.25e-126 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre12g02956 Myb_DNA-binding 2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02956 - - gmx:100807793 592.808