Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02949 ATGACGACGGTGGCACTGAAGTTCGGTAGAAGAATGAACACGGCACTCCGATCATCCAACCTTATCTATCGCTCTTCCTCTTCCAATCTTCTCTCCGCTAACTTCCTCATGCAAATTCCCCTCACTCGCAAGATGAGCACGGATGCACATAGTATTGCCTCCCAGCTCAACAGTTCGGGGCTGTTGAGGACTCAGGGCCTCATTGGAGGGAAATGGCAGGATGCTTATGATGGGAAAACCATAAAGGTTTATAATCCATCAACTGGCGAATCTATAGCAGATGTAGCATGCATGGGTGGAAGGGAAACAAATGATGCAATTTCCTCTGCTTTTGATGCATTTAAATTATGGAGCAAAACCACTGCTGCTGAGCGAAGTAAATATCTGAGAAAATGGTATGATTTGCTCATTGCACACAAAGAAGAGTTAGCACAACTTATAACCTTGGAGCAAGGAAAGCCTTTTAAAGAGTCTCTGGGTGAGATAAATTACAGTGCTGGCTTTATTGAGTTTGCATCAGAGGAGGCAAAACGTATATATGGGGATATAATTCCTGCACCTCAATCTGATCGACGGTTATTTGTTTTAAAGCAGCCTGTTGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACCCGAAAGGTTGGTCCAGCCCTTGCATGTGGATGTACAGTGGTCATAAAGCCCTCTGAACTTACGCCTCTGACTGCTTTAGCTGCAGCTGAACTCTCTATTCAAGCTGGAATTCCTGCGGGTGTTGTGAACGTGGTTATGGGAAATGCTCCTGATATTGGAGACGCTTTAATCGCAAGTCCACAGGTAAGGAAGATTACATTCACTGGCTCGACGGCTGTTGGAAAGAAATTGATGGCTGGTTCTGCCGAGACAGTTAAAAAAGTATCTCTGGAGCTTGGTGGCAACGCACCTTGCATAGTTTTTGATGATGCTGACCTGGATGTTGCAGTGAAAGGAACACTTGCAGCAAAGTTCCGTAATAGCGGACAAACTTGTGTTTGTGCAAATAGAATTCTTGTGCAAGAAGGTATATATGACAAATTTGCAAATGCATTGCTCGATGCTGTTCAGAGCATGAAAGTTGGAGATGGTTTTAGTGAAGGTGTAGCTCAGGGCCCTCTGATCAATGAAGCTGCTGTCAAAAAGGTTGACTCCTTGATTCATGATGCTACATCAAAGGGGGCAAAAGTAATTCTTGGGGGTAAAAGACATACCCTTGGATCAACTTTTTATGAACCAACAGTCATCACTGATGTCGACAATGACATGCTTATATCAAGACAGGAAGCATTTGGACCTGTCGCACCCCTTTTGAGATTCAAAACTGAAGAGGATGCTATCAGAATTGCTAATGACACTAATGCAGGCTTGGGTTCATACGTATTTACAAACAGTATCCAACGATCATGGCGTGTGGCCGAGGCTCTTGAATATGGACTTGTAGGTGTTAATGAAGGAGTAATTTCAACAGAGGTGGCTCCATTTGGTGGAGTTAAACAGTCTGGTCTCGGAAGAGAAGGTTCCAAATATGGGATGGATGAATATTTGGAGATCAAGTATGTTTGCTTGGGAAACATGAACAAAGATTGA 1620 0.437 MTTVALKFGRRMNTALRSSNLIYRSSSSNLLSANFLMQIPLTRKMSTDAHSIASQLNSSGLLRTQGLIGGKWQDAYDGKTIKVYNPSTGESIADVACMGGRETNDAISSAFDAFKLWSKTTAAERSKYLRKWYDLLIAHKEELAQLITLEQGKPFKESLGEINYSAGFIEFASEEAKRIYGDIIPAPQSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPAGVVNVVMGNAPDIGDALIASPQVRKITFTGSTAVGKKLMAGSAETVKKVSLELGGNAPCIVFDDADLDVAVKGTLAAKFRNSGQTCVCANRILVQEGIYDKFANALLDAVQSMKVGDGFSEGVAQGPLINEAAVKKVDSLIHDATSKGAKVILGGKRHTLGSTFYEPTVITDVDNDMLISRQEAFGPVAPLLRFKTEEDAIRIANDTNAGLGSYVFTNSIQRSWRVAEALEYGLVGVNEGVISTEVAPFGGVKQSGLGREGSKYGMDEYLEIKYVCLGNMNKD 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02949 539 NCBIfam succinate-semialdehyde dehydrogenase 83 529 IPR010102 GO:0009013|GO:0009450
Trre12g02949 539 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 307 314 IPR029510 GO:0016491
Trre12g02949 539 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 335 346 IPR016160 GO:0016491
Trre12g02949 539 Pfam Aldehyde dehydrogenase family 72 531 IPR015590 GO:0016491
Trre12g02949 539 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 58 536 - -
Trre12g02949 539 FunFam Succinate-semialdehyde dehydrogenase I 78 323 - -
Trre12g02949 539 FunFam Succinate-semialdehyde dehydrogenase I 311 500 - -
Trre12g02949 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 311 500 IPR016163 GO:0016620
Trre12g02949 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 78 525 IPR016162 GO:0016491
Trre12g02949 539 SUPERFAMILY ALDH-like 59 537 IPR016161 GO:0016491
Trre12g02949 539 CDD ALDH_F5_SSADH_GabD 83 533 - -
Trre12g02949 539 FunFam Aldehyde dehydrogenase, putative 503 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02949 Trre-Chr12 42649619 42660762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02949 43 538 Aldehyde Dehydrogenase Gene Family AT1G79440 79.435 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02949 K17761 - gmx:100808318 911.368