Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02940 ATGATTAAAGCCTTCGCGGCCGGGGTAATTTTAGCGACCGGATTCATACACATACTTCCAGAAGCATTTGAGAGTTTGAATTCACCTTGTCTTAAGGAAAAACCTTGGGGAGATTTTCCATTTGCTGGACTTGTTGCTATGTTGTCTTCTATTGCAACTTTAATGGTTGATTCATTTGCATCTAGTTATTATCAAAGAAGACATTTTAATTCTTCTAAACAAGTTCCTCATGAAGATGAAGAAATGGGAGATGGACATGTTGGTCACATACATGTTCATACACATGCTACACATGGTCATACTCATGGATCAACTAACTCTTCTCATGATTCAATATCATCTGAACTAATTAGGCAAAGGATCATATCACAAGTGTTGGAGCTAGGAATAGTGGTACATTCAGTGATCATTGGAATATCTTTAGGCACTGCACAAAGTATTGATACCATAAAGCCTCTCCTAGTGGCCTTGTCTTTCCATCAATTTTTTGAGGGAATGGGGCTTGGTGGTTGCATATCGCAGGCAAAATTTGAGTCTAGATCCACAGCAATCATGGCAACATTTTTCTCCCTAACAACACCAATTGGTATAGCAATTGGGATTGGAATATCAAGTGGATACAAAGAGAATAGCCCAACATCTCTAATTATTGAAGGGGTTTTCAATTCTGCTTCAGCTGGAATTTTGATTTACATGGCCTTAGTTGACCTATTAGCAGCTGATTTTATGAGTCCAAGATTGCAAAATAATTTGAAGATCCAAATAGGAGCAAATATTTCACTTCTTTTAGGTTCAGGTTGCATGTCCTTATTGGCCAAATGGGCCTAA 828 0.3804 MIKAFAAGVILATGFIHILPEAFESLNSPCLKEKPWGDFPFAGLVAMLSSIATLMVDSFASSYYQRRHFNSSKQVPHEDEEMGDGHVGHIHVHTHATHGHTHGSTNSSHDSISSELIRQRIISQVLELGIVVHSVIIGISLGTAQSIDTIKPLLVALSFHQFFEGMGLGGCISQAKFESRSTAIMATFFSLTTPIGIAIGIGISSGYKENSPTSLIIEGVFNSASAGILIYMALVDLLAADFMSPRLQNNLKIQIGANISLLLGSGCMSLLAKWA 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02940 275 Pfam ZIP Zinc transporter 2 272 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Trre12g02940 275 NCBIfam ZIP zinc/iron transport family 1 275 IPR004698 GO:0005385|GO:0016020|GO:0071577
Trre12g02940 275 PANTHER ZINC/IRON TRANSPORTER 2 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02940 Trre-Chr12 42511066 42513477 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02940 1 275 Inorganic Solute Cotransporters AT3G12750 64.643 4.14e-128 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02940 K14709 - gmx:100805124 403.675