Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02939 ATGACCTTCCTAACTACTATCATAAAGTTATTATTTTTTTATATCTTTATTCTCCTCCCAACTCTTGTTTCAAGCGATTCATGCACATGTGAAACAGAACAAACCAAAGGAAATAATGAAAAAAATGAAGCTTTTCATTACAAACTTGGTTCAATTGCTTCTGTCCTTGTTTGTGGTGCTCTTGGTGTAAGCCTACCCTTATTAAGCAAAAGAATTCCAATTCTAAGTCCTAAAAATGACATCTTTTTCATGATTAAAGCCTTCGCGGCCGGGGTAATTTTAGCGACCGGATTCATACACATACTTCCAGAAGCATTTGAGAGTTTGAATTCACCTTGTCTTAAGGAAAAACCTTGGGGAGATTTTCCATTTGCTGGACTTGTTGCTATGTTGTCTTCTATTGCAACTTTAATGGTTGATTCATTTGCATCTAGTTATTATCAAAGAAGACATTTTAATTCTTCTAAACAAGTTCCTCATGAAGATGAAGAAATGGGAGATGGACATGTTGGTCACATACATGTTCATACACATGCTACACATGGTCATACTCATGGATCAACTAACTCTTCTCATGATTCAATATCATCTGAACTAATTAGGCAAAGGATCATATCACAAGTGTTGGAGCTAGGAATAGTGGTACATTCAGTGATCATTGGAATATCTTTAGGCACTGCACAAAGTATTGATACCATAAAGCCTCTCCTAGTGGCCTTGTCTTTCCATCAATTTTTTGAGGGAATGGGGCTTGGTGGTTGCATATCGCAGGCAAAATTTGAGTCTAGATCCACAGCAATCATGGCAACATTTTTCTCCCTAACAACACCAATTGGTATAGCAATTGGGATTGGAATATCAAGTGGATACAAAGAGAATAGCCCAACATCTCTAATTATTGAAGGGGTTTTCAATTCTGCTTCAGCTGGAATTTTGATTTACATGGCCTTAGTTGACCTATTAGCAGCTGATTTTATGAGTCCAAGATTGCAAAATAATTTGAAGATCCAAATAGGAGCAAATATTTCACTTCTTTTAGGTTCAGGTTGCATGTCCTTATTGGCCAAATGGGCCTAA 1077 0.3677 MTFLTTIIKLLFFYIFILLPTLVSSDSCTCETEQTKGNNEKNEAFHYKLGSIASVLVCGALGVSLPLLSKRIPILSPKNDIFFMIKAFAAGVILATGFIHILPEAFESLNSPCLKEKPWGDFPFAGLVAMLSSIATLMVDSFASSYYQRRHFNSSKQVPHEDEEMGDGHVGHIHVHTHATHGHTHGSTNSSHDSISSELIRQRIISQVLELGIVVHSVIIGISLGTAQSIDTIKPLLVALSFHQFFEGMGLGGCISQAKFESRSTAIMATFFSLTTPIGIAIGIGISSGYKENSPTSLIIEGVFNSASAGILIYMALVDLLAADFMSPRLQNNLKIQIGANISLLLGSGCMSLLAKWA 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02939 358 Pfam ZIP Zinc transporter 46 355 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Trre12g02939 358 PANTHER ZINC/IRON TRANSPORTER 44 351 - -
Trre12g02939 358 NCBIfam ZIP zinc/iron transport family 30 358 IPR004698 GO:0005385|GO:0016020|GO:0071577
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02939 Trre-Chr12 42510817 42513477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02939 5 358 Inorganic Solute Cotransporters AT3G12750 60.724 2.20e-151 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02939 K14709 - gmx:100805124 490.73