Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02897 ATGGAGCAACCACAACACTTAGTAGAACATAACTTCCCACTCTTCAAACCATCACGCAAACCCTCAACAAACCCTTCACTCCCCACTTCCATTCTCACCAAACCTAATCCCCAAACCCAAACCCAAACCCAAACCCCTCAAAACGACGTCGTTACCCATGAAAACCCTAAATCCAACCCCGAAAACACTGCCACAACAACCTTCTCCGATCTCGGCCTCTCCGAATGGGCAGTCAAAACATGCAAAGAGCTTGGAATGAAATTTCCACGTCGCGTCCAACAGTACTGCATCCCGAAGATTCTAGAAGGTCGTCATGTGATTGGAATTGATGAGACTGGTAGCGGTAAAACGGCGGCTTTTGCGCTTCCGATTCTTCAGCGACTAGACGAGCATCCGTTTGGTGTGTTTGCTCTTGTGATTACGCCGACTCGTGAGCTTGCATTTCAGTTGAAAGATCAGTTTCATGCTCTTGGATCATCGGTTACGAACCGAATTGCGGTGGTTGTTGGTGGTATGGATATGCTTACACAGACGAAGGAGTTGGTTGCTAGGCCTCATCTTGTTATTGCTACTCCTGGGAGGATTAATGTTTTGCTTAAGGATAATCCTGAAATTGCTCCTGTTTTCGCTAGGACTAAGTTTCTTGTCTTGGATGAAGCAGATCGAGTCTTGGATGTTGGGTTTCAGGAGGAATTGAAATGTATCTTTCAGTGCTTACCAGAAAACCGCCAAAATCTATTCTTTTCTGCAACCACGACTAGTAATCTGCAAAAGTTGCGTGAGCGTTATCAAGATAAGCTGTATGCCTTCGAGGCTTATGAAGGGTTTAAAACAGTTGAGAAGCTCACTCAACAAGTTGTATTCATCCCTAAAAAGGTGAAGGATGTATATTTGTTGCATATCTTGTCTAAAATGAAAGATATGGGTATTCGTTCTGCAATTGTCTTCGTCTCTACTTGCAGAGATTGTCATCGTTTAAATTTAATGTTGGAAGTGCTTGATCAAGAAGTTGCAGCTCTATATTCATACAGATCACAGTCTCAGAGGCTTGAAGCACTTCAAGAATTTAAATCTGGAAAGGTTCCTATATTACTTGCAACTGATGTTGCTGGTCGTGGTTTGGATATTCCTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCACGAGATTATATCCACCGTGTAGGTCGTACCGCAAGAGCAGGTAGAGGGGGACTTGCTTTGAGCCTAGTCACTCAGAATGATGTTGATCTCATTCGTGAAATAGAGGCCCTTATTGAAAGGCAACTTGAAATGATTGAATACAAAGAAAATGAGGTGCTTTCACTCATGAAAAAGGTTTTCACTGCTAATAATGTTGCAAAAATGAAGATGATGGATGACGGCTTTGAAGAGAAAGCTAAAGAGCGGAAAAAACAGAAACTGAAAATGCTAGAAGAGAAAGGATTATTAAAGCAAAGAAGTAAGAGAAAAAGAAACAAAGAATTTGTAGAGAAAGGAAATAAACCGGGAAAAGTGGAAGTAGATGCATTATCAAATATAGCATCTCCAAAAAAGAAGAGTAAGAAGAGAAAGTAA 1587 0.4134 MEQPQHLVEHNFPLFKPSRKPSTNPSLPTSILTKPNPQTQTQTQTPQNDVVTHENPKSNPENTATTTFSDLGLSEWAVKTCKELGMKFPRRVQQYCIPKILEGRHVIGIDETGSGKTAAFALPILQRLDEHPFGVFALVITPTRELAFQLKDQFHALGSSVTNRIAVVVGGMDMLTQTKELVARPHLVIATPGRINVLLKDNPEIAPVFARTKFLVLDEADRVLDVGFQEELKCIFQCLPENRQNLFFSATTTSNLQKLRERYQDKLYAFEAYEGFKTVEKLTQQVVFIPKKVKDVYLLHILSKMKDMGIRSAIVFVSTCRDCHRLNLMLEVLDQEVAALYSYRSQSQRLEALQEFKSGKVPILLATDVAGRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVDLIREIEALIERQLEMIEYKENEVLSLMKKVFTANNVAKMKMMDDGFEEKAKERKKQKLKMLEEKGLLKQRSKRKRNKEFVEKGNKPGKVEVDALSNIASPKKKSKKRK 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02897 528 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 216 224 IPR000629 -
Trre12g02897 528 Pfam Helicase conserved C-terminal domain 308 405 IPR001650 -
Trre12g02897 528 MobiDBLite consensus disorder prediction 17 65 - -
Trre12g02897 528 Gene3D - 32 269 IPR027417 -
Trre12g02897 528 CDD SF2_C_DEAD 282 414 - -
Trre12g02897 528 Gene3D - 277 515 IPR027417 -
Trre12g02897 528 Pfam DEAD/DEAH box helicase 91 259 IPR011545 GO:0003676|GO:0005524
Trre12g02897 528 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 270 IPR014001 -
Trre12g02897 528 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 54 508 - -
Trre12g02897 528 Coils Coil 422 442 - -
Trre12g02897 528 MobiDBLite consensus disorder prediction 1 65 - -
Trre12g02897 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 425 IPR027417 -
Trre12g02897 528 CDD DEADc_DDX49 68 271 - -
Trre12g02897 528 SMART helicmild6 324 405 IPR001650 -
Trre12g02897 528 SMART ultradead3 85 285 IPR014001 -
Trre12g02897 528 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 444 IPR001650 -
Trre12g02897 528 MobiDBLite consensus disorder prediction 476 508 - -
Trre12g02897 528 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Trre12g02897 528 MobiDBLite consensus disorder prediction 476 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02897 Trre-Chr12 41232208 41238266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02897 66 434 Eukaryotic Initiation Factors Gene Family AT3G19760 30.831 1.01e-54 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02897 K14778 - gmx:100804060 728.013