Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02886 ATGGAGCCTAGAAATGAATACCAGCCGGGATTGCCGTCAGTAATGCATGATCATATGGATGACATTTATACGAGTAGAAGACTGCATGACCTCAATACAGCAGAAGTTAAACCGGTACAACATTACTCGATACAAACGGGTGAGGAATTCGCTCTTGAGTTTATGAGAGATAGAGCGAATCACGGTAACCCTGTATTTCCGAATGTCGGTGATCCGAATTATGCAACTGGTTATATGGAACTGAAAGGAATATTAGGTATCAGTCATGCTGGATCTGAAACTGGATCAGACATTTCCATGCTATCATTGATGGAGAAATATCCTAAAGAGTTTGATAGAAGCCAGTATGGATCAATTCGATCAATACCAAGATCTTCACTGAATCAGGACAACAAACAGTTTGTGCATGGATATGGCTCTTCCGAAAGTTATGATAACTCATCAATCATGATGAAGTTCCTTTGCAGCTTCGGTGGTAGAATATTGCCACGGCCAAGTGATGGAAAGCTAAGGTATGTTGGAGGCCAAACACGTATTCTCCGTATAAGAAAGGACATATCTTATCACGAGCTCATTCAGAAAGCATTGGTGATCTATAACCAGATTCATACAATTAAGTATCAGCTTCCTGGTGAAGATCTCGATGCTTTGGTATCTGTGTCATCTGACGAGGATATACAGAATATGATGGAAGAATGTAATCATCTAGAAGATAGAGAAGGATCACAAAAACTTAGGATGTTTTTGTTCTCGATCAGTGATATGCAGGATGCTCAGTTTGGTCTCGGCTGCACAAGTGATGAATCTGAAATCCAATATGTTATTGCTGTTAATGGCATGGACTTGGAGTCAAGAAAAAACTCAACCATGGTCGGTTTCAGCTATTCTGCAAACGATATAAATGAATTTGACAGGCAAAATATTGACGGTGAGGCTAATGAAAATGCTCCCCTGACGCACAATTTTGACTCGTCATTGGGTACTCATTTTTCACAACCAGTACTACCAACTTCCTCAAATTCATACGAAATGTATCCAATGTATTATGGCGATCAAATGATGCGTCATGGTGAACCAAATGGTCATGATCAATATCTTATGCATCATGGTGTTGTTAATCCTTCTTATAAACCTCTTTTTGAAGAGACTCCTATTAATATGATTCCTCATATGCCAAATATTCAACGAGGGGTTTTAAATGAAGGCTATCTGCCTAGTGGAGTACAGGTACAAAATGCAGAAATACCAGAAACTTTGGTGAGAATGATGGCCGATAGTTCAATTCAACAAGAAACAATATCTCCGTCTCCTTCCCAACTGTTTGACGGTTACTCAAAAAATGATATTCCCGAAGCAACAGTTGCAGTTACTGCTGCAGAGGGATATTCATTGCCTCCAACAAGAATGAACCAGCTCCAGGATTATGAAGAGGCTTCTTCTACATCCAGCAGTGCATTTGGTGCAGGTCCTTATGTTGATTCCCGCTCCAATGCAGTTGACTTGAGTAGTCTTCACCCTCCCCCTCTTCCTAAAAGAGTTTATTATTCAGAAAGAATTCCAAGGGAGCAAGTAGAGTCGTTAAACCGTTCCTCAAAGTCGGATGATGCACACAATTCTCAGTTTCATGTTTCAGATTTACTTTCTGGTGTCAACTCGCAGAATTCAGCTATAGACTCTGGTAACAACTTGCACGATGGAAATCTGTCTAATCTTGCCGAGGAATCGAGCATCACAGCGAAGCCCTTGCATGCAGATGGCGAAGGAAACAAAGATATCTTAAATAAGGACAATGCTGTTATGCTGGAAACGGAAAATTATTGTAACGATAACCATGAAAAATCCCCAGTTGAAGGTAAATCAGACATCCCTTTGAAAGAATCAAACAATGATTTTAATGTGCAAGTACTACCTGTTCCTTTGACTGCGAAAGTTGATTCAGAAGCACCAGGTGACATTCTTATTGATATTAATGATCGATTCCCTCGTGAATTGCTTAATGATATGTTCTCGAAAGCAATACTAGAAGAAGATTCCTCTAGTCAGCATGCATTAGCTTCAGATGGAATGAGTTTAAGTATTAACATGGAAAACCATGAACCTAAAAGTTGGTCATATTTTCAAAAATTGGCGCAAGATGGGATCGGTAACGCGTCTCTTATTGACCAGGATCATCTTGGTTTTTCACCTGCTATAGTTGGAGATAATAGAGCTCAACATGTTACACCTTTAACAACTGATGAAGTTCCTCTAAACCGTGCAGAATTCCATCTCAATTTTGGTGAAGAAATTCAGAAAGACTTGCATGGAGAAAATGAAACTGAAACTACTGTCCTGCAATCAAATTATGATCAGTCACAAATTAATGACACTGAAAGTATGCAATTTGATGCTATGTTGGACAACCTAAGAGCACAAGATTCAGTATATGAGGATGGAAAGTTTGAAAAGAAAAATAACAGTCTACCTCCTCTTGATCCTTCTTTAGGAGAATTTGATATGAGTACCTTGCAGGTAATAATGAATGAAGATCTGGAAGAGCTGAAGGAACTAGGTTCTGGTACCTTTGGAACTGTATATCATGGAAAATGGCGAGGAACAGATGTTGCCATTAAGAGAATAAAGAAAACCTGCTTCACTGGTCGATCATCTGAGCAAGAGAGACTGACTGTTGAGTTCTGGCGGGAAGCTGACATTCTTTCCAAGCTTCATCATCCAAATGTTGTGGCATTTTATGGTGTGGTGCAGGATGGACCAGGAGGAACAATGGCAACCGTCACAGAGTATATGGTGGATGGTTCTCTCAGGCATGTATTACTTCGCAAGGATAGGTATCTCGATCGTCGCAAGAGACTGATAATTGCGATGGATGCAGCTTTTGGAATGGAATATTTGCACTCCAAAAACATTGTGCATTTCGACTTAAAATGTGACAATTTACTTGTAAACTTAAAAGATCCATTACGGCCAATATGCAAGGTTGGTGATTTTGGTTTGTCAAAAATTAAACGAAATACCTTGGTTTCTGGTGGGGTGCGAGGCACTCTACCTTGGATGGCACCAGAGCTGCTCAATGGTAGCAGCAGCAAGGTCTCAGAAAAGGTGGATGTGTTCTCCTTTGGCATAGTACTATGGGAGATTCTTACTGGTGAGGAGCCATATGCCAATATGCACTATGGTGCAATCATAGGTGGAATTGTTAACAACACACTAAGACCAACAATCCCAAATTATTGTGATATTGAATGGAGAACACTGATGGAGCAATGTTGGGCACCAAATCCTGCAGTTAGGCCATCCTTCACAGAAATAGCGAGTCGATTGCGCATTATGTCTACAGCAGCTAGCCAAACCAAGTCACCGGGACACAAGGCATCCAAATGA 3381 0.4037 MEPRNEYQPGLPSVMHDHMDDIYTSRRLHDLNTAEVKPVQHYSIQTGEEFALEFMRDRANHGNPVFPNVGDPNYATGYMELKGILGISHAGSETGSDISMLSLMEKYPKEFDRSQYGSIRSIPRSSLNQDNKQFVHGYGSSESYDNSSIMMKFLCSFGGRILPRPSDGKLRYVGGQTRILRIRKDISYHELIQKALVIYNQIHTIKYQLPGEDLDALVSVSSDEDIQNMMEECNHLEDREGSQKLRMFLFSISDMQDAQFGLGCTSDESEIQYVIAVNGMDLESRKNSTMVGFSYSANDINEFDRQNIDGEANENAPLTHNFDSSLGTHFSQPVLPTSSNSYEMYPMYYGDQMMRHGEPNGHDQYLMHHGVVNPSYKPLFEETPINMIPHMPNIQRGVLNEGYLPSGVQVQNAEIPETLVRMMADSSIQQETISPSPSQLFDGYSKNDIPEATVAVTAAEGYSLPPTRMNQLQDYEEASSTSSSAFGAGPYVDSRSNAVDLSSLHPPPLPKRVYYSERIPREQVESLNRSSKSDDAHNSQFHVSDLLSGVNSQNSAIDSGNNLHDGNLSNLAEESSITAKPLHADGEGNKDILNKDNAVMLETENYCNDNHEKSPVEGKSDIPLKESNNDFNVQVLPVPLTAKVDSEAPGDILIDINDRFPRELLNDMFSKAILEEDSSSQHALASDGMSLSINMENHEPKSWSYFQKLAQDGIGNASLIDQDHLGFSPAIVGDNRAQHVTPLTTDEVPLNRAEFHLNFGEEIQKDLHGENETETTVLQSNYDQSQINDTESMQFDAMLDNLRAQDSVYEDGKFEKKNNSLPPLDPSLGEFDMSTLQVIMNEDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKTCFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQDGPGGTMATVTEYMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSSKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPNYCDIEWRTLMEQCWAPNPAVRPSFTEIASRLRIMSTAASQTKSPGHKASK 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02886 1126 SMART PB1_new 165 252 IPR000270 GO:0005515
Trre12g02886 1126 PRINTS Tyrosine kinase catalytic domain signature 1034 1056 IPR001245 GO:0004672|GO:0006468
Trre12g02886 1126 PRINTS Tyrosine kinase catalytic domain signature 1078 1100 IPR001245 GO:0004672|GO:0006468
Trre12g02886 1126 PRINTS Tyrosine kinase catalytic domain signature 963 981 IPR001245 GO:0004672|GO:0006468
Trre12g02886 1126 PRINTS Tyrosine kinase catalytic domain signature 926 939 IPR001245 GO:0004672|GO:0006468
Trre12g02886 1126 CDD STKc_MAP3K-like 850 1107 - -
Trre12g02886 1126 Gene3D Phosphorylase Kinase; domain 1 837 931 - -
Trre12g02886 1126 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 932 1124 - -
Trre12g02886 1126 ProSitePatterns Protein kinases ATP-binding region signature. 850 875 IPR017441 GO:0005524
Trre12g02886 1126 Pfam PB1 domain 167 250 IPR000270 GO:0005515
Trre12g02886 1126 ProSiteProfiles Protein kinase domain profile. 844 1109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02886 1126 MobiDBLite consensus disorder prediction 498 517 - -
Trre12g02886 1126 Gene3D - 169 252 - -
Trre12g02886 1126 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 837 931 - -
Trre12g02886 1126 CDD PB1_UP2 154 250 - -
Trre12g02886 1126 SUPERFAMILY Protein kinase-like (PK-like) 833 1107 IPR011009 -
Trre12g02886 1126 Gene3D Transferase(Phosphotransferase) domain 1 932 1125 - -
Trre12g02886 1126 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 170 252 - -
Trre12g02886 1126 SMART serkin_6 844 1110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02886 1126 Pfam Protein tyrosine and serine/threonine kinase 845 1107 IPR001245 GO:0004672|GO:0006468
Trre12g02886 1126 SUPERFAMILY CAD & PB1 domains 166 257 - -
Trre12g02886 1126 PANTHER SERINE-THREONINE PROTEIN KINASE 195 1108 - -
Trre12g02886 1126 ProSitePatterns Serine/Threonine protein kinases active-site signature. 969 981 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02886 Trre-Chr12 40987274 40993923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02886 32 1126 MAP Kinase Kinase Kinase AT1G16270 48.915 0.0 976
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Trre12g02886 PK_Tyr_Ser-Thr 3.6e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02886 - - gmx:100801946 1626.68