Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02858 ATGGAAGGGGATCAGTTGTTGCTGATTTATGAATACTTGGCAAACAATAGTCTAGCTCGTGCTTTATTTGGTCCAGAGGAACACCAAATAAAATTAGATTGGTCTACAAGGCAGAAGATTTGTGTTGGCATTGCTAAAGGTTTGGCATACCTCCATGAAGAATCAAGACTGAAGGAGGAAAATACTCACATTAGTACTAGAATTGCTGGGACCTACGGATATATGGCTCCTGAGTATGCAATGCATGGTTATTTGACTGACAAAGCAGATGTTTATAGTTTTGGTGTTGTTGCCTTGGAGATCGTTAGTGGAAGGAGTAACACCATGCATCGGGCAAAGGAGGAAGCATTCTATATTCTTGATTGGGTTTTTGCTTATTGGAGAGGACAGTAG 393 0.4071 MEGDQLLLIYEYLANNSLARALFGPEEHQIKLDWSTRQKICVGIAKGLAYLHEESRLKEENTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGVVALEIVSGRSNTMHRAKEEAFYILDWVFAYWRGQ 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02858 130 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 58 - -
Trre12g02858 130 Pfam Protein tyrosine and serine/threonine kinase 60 115 IPR001245 GO:0004672|GO:0006468
Trre12g02858 130 Gene3D Transferase(Phosphotransferase) domain 1 1 57 - -
Trre12g02858 130 Gene3D Transferase(Phosphotransferase) domain 1 58 130 - -
Trre12g02858 130 ProSiteProfiles Protein kinase domain profile. 1 130 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02858 130 SUPERFAMILY Protein kinase-like (PK-like) 2 121 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02858 Trre-Chr12 36642194 36643329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02858 1 124 Receptor kinase-like Gene Family AT1G53440 63.226 1.88e-61 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g02858 PK_Tyr_Ser-Thr 1.1e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02858 - - cpap:110812567 207.608