Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02850 ATGGGAGCACTTAGCACATACTATAACTATAATTGTTACCCTTATCAACCTCTTCAAACTAACACCAACTCAGAAATAATCACTTTTCAACATCATGAACAAGACCAACAGTTATTGCTACCTGAATTATCACAAATTTCAGAACATAACCACCATTTTTCTTCTTCTTATTTAGATGAAACCTTGTTTTTTCAAAGTCCTTATTTTTACTCAAATGAGACTTACCCTTCTCATGATGAACTGTTTCTTGACTCAACTTTCTCTTCTCAAAATGATGGCTTCATTTCCATGAATGAAATTTTCCCAAATGAACAAGATTTCAACACTTACCTTCCATGTGCAAAACGACAAAAGCTATTTTATGAGGAGAAAAAAGTAGAACAACAACAAGAAGAGCTTTTGAACTCAACCAATTTTTTTGTGGATGAGTTTATGACTAACCCTTTTGTTTCCTTTGAAGCGGAACAACCATTTTGTTCTGCTTCAAAAATTGTTGATGTTGTTGGTTGTGAAAAGAAAGTGAATGAAAAGACTATCTCGTGGCAGAGTATTGCGGCAAGAGAAAGAAGAAGAAAGATAACTGAGAAGACACAAGAGCTTGGAAAGTTGGTTCCTGGTGGACCTAAGATGAACACCGCAGAGATGCTTAATGCTGCTGCTAATTATGTTAAGTTTCTTCAAGCTCAAGTTGGAATGCTTCAAGTTATGGGAACATTAAGCAAGGAACAAAAGGAACCTCCTCCAAGTCATGATCTACACAAACTACTTATTTCTCCCTTTGTTCAAGAGAAATTGTATTTGGAAGAAAAGTGCTTTGTTACAAAAGAGTTTGTCACCACACTAACCAATCATGATGATGTTAGATCAAAACCTACCATCCTTAAAGGTCTTAAACAGCTTATTGGAATAGAGAATAATGAGAAAAAACCAAAGCAAGAATAA 942 0.3493 MGALSTYYNYNCYPYQPLQTNTNSEIITFQHHEQDQQLLLPELSQISEHNHHFSSSYLDETLFFQSPYFYSNETYPSHDELFLDSTFSSQNDGFISMNEIFPNEQDFNTYLPCAKRQKLFYEEKKVEQQQEELLNSTNFFVDEFMTNPFVSFEAEQPFCSASKIVDVVGCEKKVNEKTISWQSIAARERRRKITEKTQELGKLVPGGPKMNTAEMLNAAANYVKFLQAQVGMLQVMGTLSKEQKEPPPSHDLHKLLISPFVQEKLYLEEKCFVTKEFVTTLTNHDDVRSKPTILKGLKQLIGIENNEKKPKQE 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02850 313 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 47 277 IPR045843 GO:0003700|GO:0006355
Trre12g02850 313 Pfam Helix-loop-helix DNA-binding domain 185 227 IPR011598 GO:0046983
Trre12g02850 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 235 IPR036638 GO:0046983
Trre12g02850 313 Gene3D - 180 245 IPR036638 GO:0046983
Trre12g02850 313 SMART finulus 183 232 IPR011598 GO:0046983
Trre12g02850 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 226 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02850 Trre-Chr12 36543716 36546703 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02850 1 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G34820 36.656 1.07e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre12g02850 HLH 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02850 - - tpra:123914583 530.406