Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02847 ATGTTACCTTCCACACCAATCTCTGCAATTGTGCCAGGAAAACTTGATTTTCAAGTCAGGGTTAGGGTTATTCATTTATGGATTGTACCAGATCGCATGAAACCTACTGAAGATGGAACCATTCAAATGCTTTTCCTTGATGATAAGTGTCACAAAATTCAAGCTACTGTTCGAAAGGATCTTATTCCTAAATATATGGATCAACTTGAAGAAGGTTCGGCTTATGTTTTTGAAAAGTTCATCTACAAATCTATCGGTCATAAATATAAGCTGAATTTTATGACCTCGACTACGGTTTTCAAAGTAACTGCTCCTGAGATACCTAGATATCATTTTGATTTTGTGCCCTTTTCCGAAATTCTCAATGCTACTGACGAGTCTAGGTTGGTTGATGTGATCGGTCATGTAGTTGAGAAAGGTGTTGTGAAGGAAACAATTGTTAAGGGTAAAAAGAGCAAAGTTACAAACTTGACATTGAAGGATTTAGAAAACAATCGATTACACTGCTCTTTGTGGAACGATTTTGCTGTGCGCTTTCACCAATTTATGGATACCCATAACTCATCTGAACCTCCTGTTATGATACTACAATTGGTCAGACTAAAGAAAAACTCCTATTTAGGTGTTATGGGAGTAATCAATATCTTTAATGGAACTAAGATGCTGCTGAATGCTGACATTCCGGATGTTGCAGAGTATAAAGTGAAGATGGATGATATTGAGCGCGAGTCAACTGAAGGTGTCACTGAAATCACCGAACCAATAATACTAAGTTTGTGA 780 0.3718 MLPSTPISAIVPGKLDFQVRVRVIHLWIVPDRMKPTEDGTIQMLFLDDKCHKIQATVRKDLIPKYMDQLEEGSAYVFEKFIYKSIGHKYKLNFMTSTTVFKVTAPEIPRYHFDFVPFSEILNATDESRLVDVIGHVVEKGVVKETIVKGKKSKVTNLTLKDLENNRLHCSLWNDFAVRFHQFMDTHNSSEPPVMILQLVRLKKNSYLGVMGVINIFNGTKMLLNADIPDVAEYKVKMDDIERESTEGVTEITEPIILSL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02847 259 CDD RPA1_DBD_B_like 131 234 - -
Trre12g02847 259 Gene3D - 2 104 IPR012340 -
Trre12g02847 259 Pfam Domain of unknown function DUF223 44 124 IPR003871 -
Trre12g02847 259 Gene3D - 105 246 IPR012340 -
Trre12g02847 259 SUPERFAMILY Nucleic acid-binding proteins 2 102 IPR012340 -
Trre12g02847 259 CDD RPA1_DBD_A_like 19 99 - -
Trre12g02847 259 SUPERFAMILY Nucleic acid-binding proteins 111 234 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02847 Trre-Chr12 36493201 36494568 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02847 6 245 Core DNA Replication Machinery Family AT5G08020 22.179 1.73e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02847 - - mtr:112422829 281.182