Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02843 ATGGCTTCATCCCTTTTCACAAAGATTCTTTTAGGTCCTCGCTCGATTCACACTTCTTCCTTTCTCACACACCACCCACCAATTCTCTCTTCTTTCATCACTAAGCGGCTCTTTTCTGTACGAGCTGTTCCAAACTCTACAGCCCAAAACACCAAGTCGACTTGTTGGTCTCCTTGTATGGCTTCTTCAGTAGTTAGCAGAAGAGCTACATATTCAACGCGATCTGCACCTACAAATGAGCCAGTTGTTTCCGTGGATTGGCTTTACGATAACCTAAAGGAGCCTGATATTAAGGTGGTGGATGCCTCTTGGTACATGCCGGATGAGCAGAGGAATCCAATTCAAGAGTATCAGGTTGCTCACATTCCTGGGGCTCTTTTCTTTGATGTAGATGGAATAGCAGATCGAACAACAAATCTGCCACACATGTTGCCATCAGAAGAAGCTTTTGCGGCTGCTGTTTCTGCTCTTGGAATACAGAACAAAGATGACTTGGTGGTTTATGATGGCAAAGGATTATTTAGTGCAGCTCGTGTTTGGTGGATGTTCCGAGTGTTTGGGCATGACAGAGTTTGGGTATTAGATGGTGGCCTGCCAAGATGGCGTGCATCTGGTTATGATGTTGAATCTAGTGCTTCGAGTGATGCTATTCTTAAAGCCAGTGCTGCAAGTGAGGCAATAGAGAAAGTGTATCAGGGACAAGCAGTTGGTCCAATCACATTTGAGACTAAGTTTCAGCCACATCTTGTTTGGACCCTCGAACAGGTAACAAAAAATATAGAGGAAAAATCTTACCAACACGTAGATGCTCGCGGAAAGGCCAGGTTTGATGGAATTGCACCAGAGCCCAGAAAGGGAATCAGAAGTGGTCATGTACCTGGCAGCAAATGCATTCCTTTTTCCCAGATGTTAGATGGTTCACAATCATTGTTACCAGCCGATGAGCTTAAGAAGCGGTTTGATCAAGAAGGCATCTCTTTGGAAAAACCAGTTGTGACTTCGTGTGGAACTGGAGTAACTGCATGCATTCTTGCATTGGGTCTTCATCGTCTTGGAAAGACCGATGTTCCGGTTTATGACGGATCGTGGACTGAATGGGGAGCACATCCTGATACACCTGTTGACACCGCCGCACAAGCGCAATAG 1146 0.4546 MASSLFTKILLGPRSIHTSSFLTHHPPILSSFITKRLFSVRAVPNSTAQNTKSTCWSPCMASSVVSRRATYSTRSAPTNEPVVSVDWLYDNLKEPDIKVVDASWYMPDEQRNPIQEYQVAHIPGALFFDVDGIADRTTNLPHMLPSEEAFAAAVSALGIQNKDDLVVYDGKGLFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASSDAILKASAASEAIEKVYQGQAVGPITFETKFQPHLVWTLEQVTKNIEEKSYQHVDARGKARFDGIAPEPRKGIRSGHVPGSKCIPFSQMLDGSQSLLPADELKKRFDQEGISLEKPVVTSCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGAHPDTPVDTAAQAQ 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02843 381 PANTHER THIOSULFATE SULFERTANSFERASE 76 378 IPR045078 GO:0016783
Trre12g02843 381 FunFam Sulfurtransferase 246 377 - -
Trre12g02843 381 ProSiteProfiles Rhodanese domain profile. 261 375 IPR001763 -
Trre12g02843 381 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 79 212 IPR036873 -
Trre12g02843 381 CDD TST_Repeat_1 82 205 - -
Trre12g02843 381 ProSitePatterns Rhodanese signature 1. 117 128 IPR001307 GO:0004792
Trre12g02843 381 Gene3D - 75 217 IPR036873 -
Trre12g02843 381 Gene3D - 246 378 IPR036873 -
Trre12g02843 381 ProSiteProfiles Rhodanese domain profile. 93 210 IPR001763 -
Trre12g02843 381 Pfam Rhodanese-like domain 84 203 IPR001763 -
Trre12g02843 381 Pfam Rhodanese-like domain 253 368 IPR001763 -
Trre12g02843 381 ProSitePatterns Rhodanese C-terminal signature. 356 366 IPR001307 GO:0004792
Trre12g02843 381 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 254 376 IPR036873 -
Trre12g02843 381 CDD TST_Repeat_2 252 368 - -
Trre12g02843 381 FunFam Sulfurtransferase 75 217 - -
Trre12g02843 381 SMART rhod_4 251 372 IPR001763 -
Trre12g02843 381 SMART rhod_4 83 207 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02843 Trre-Chr12 36320879 36332284 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02843 60 376 Sulfurtransferasese or Rhodanese AT1G79230 78.864 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02843 K01011 - gmx:100798053 657.521