Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02829 ATGTGCTCTGCCACTGCCACTGCCACAACACCCTTCATTCGCCTCTGCAAACCCTTTCATTCTAGGGTTCCTACTTCTCTTACCTTCAATTCCACACGACCTACCTTCTTTGTTAGGGCTACGGTGGTAAAATGGCGATGTCCAAATCAAACTCTACCTCCCAACAGCGATACCGGTTTCCAAAAAAAGGCCTTGTATCTGGAATCTATCGGTATCGACTCTTTCTCACTTATTGAAAATCATCCAATGCTGATCACTGCCTCACTAGATGATATAAAATCCACGGTGGAATACATTACTGCTATGGATTTCTCTGCAATCGAGTTTCGACGTATGGTTAGCATGTGCCCAGAGATTCTTACCACCAAAGTCTCAGACATTATACCCGTCTTCATGTTTCTTCACCAAGAAGTTCGTGTAAGTGGCTCAAATATCAAGCATGTAATAAACCGTCGTCCTCGGTTGATTATCTGTAACGTCGATAAGCAACTTCGCCCCACCATGTATTTCCTCCAAAGTATCATCGGCATAAAAGATGTAAGCAAACACACCGATTTGCTATCATGTAGTGTCGAAGAAAAGTTTATACCCCGAATCGAATACTTTGAAAATATCGGATTCTCTAACCGCGATACAACTTCGATGTTTCAAAGATTTCCTCAGCTGTTTTGTTATAGTATTAAGAATAATTTGGAGCCAAAATACAATTACTTTGTGGTGGAGATGGGGAGAGATTTGAAGGAGGTGAAAGAATTTCCACGATATTTCTCATTTAGTTTAGAGAATAGGATTAAGCCTAGACATAAAAGGTGTGTAGAAATGGGTGTGTGTTTTCCACTTCCTTTATTATTAAAGACTAGTGAAGTGACATTTCAGAATAGATTAGAAACATTTGTAAATTCTTCAACACCCTTGAAAACATCTCCTCTGTGGTGTGCTGGTCATGATATTGATCAAGTATAG 963 0.3988 MCSATATATTPFIRLCKPFHSRVPTSLTFNSTRPTFFVRATVVKWRCPNQTLPPNSDTGFQKKALYLESIGIDSFSLIENHPMLITASLDDIKSTVEYITAMDFSAIEFRRMVSMCPEILTTKVSDIIPVFMFLHQEVRVSGSNIKHVINRRPRLIICNVDKQLRPTMYFLQSIIGIKDVSKHTDLLSCSVEEKFIPRIEYFENIGFSNRDTTSMFQRFPQLFCYSIKNNLEPKYNYFVVEMGRDLKEVKEFPRYFSFSLENRIKPRHKRCVEMGVCFPLPLLLKTSEVTFQNRLETFVNSSTPLKTSPLWCAGHDIDQV 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02829 320 SMART mt_12 179 208 IPR003690 GO:0003690|GO:0006355
Trre12g02829 320 SMART mt_12 213 245 IPR003690 GO:0003690|GO:0006355
Trre12g02829 320 SMART mt_12 146 178 IPR003690 GO:0003690|GO:0006355
Trre12g02829 320 SMART mt_12 110 141 IPR003690 GO:0003690|GO:0006355
Trre12g02829 320 SMART mt_12 246 277 IPR003690 GO:0003690|GO:0006355
Trre12g02829 320 SMART mt_12 75 105 IPR003690 GO:0003690|GO:0006355
Trre12g02829 320 FunFam Transcription termination factor MTEF1, chloroplastic 134 299 - -
Trre12g02829 320 PANTHER CGI-12 PROTEIN-RELATED 76 300 IPR003690 GO:0003690|GO:0006355
Trre12g02829 320 Gene3D Transcription termination factor 3, mitochondrial 125 301 IPR038538 -
Trre12g02829 320 Pfam mTERF 57 141 IPR003690 GO:0003690|GO:0006355
Trre12g02829 320 Pfam mTERF 181 292 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02829 Trre-Chr12 36024731 36027691 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre12g02829 mTERF 3.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02829 K15032 - gmx:100804440 509.22