Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02827 ATGGGAAAAGGAAGAGCACCATGCTGTGATAAGAGTCAAGTGAAGAGAGGACCTTGGAGCCCTGCTGAAGATCTAAAGCTTATTGCTTTTGTTCAGAAATTTGGTCATGAAAATTGGAGATCTCTCCCTAAACAAGCAGGTCTTCAGCGGTGTGGGAAAAGCTGTCGTTTGAGATGGATCAATTATCTTAGGCCTGATTTAAAGAGAGGCAATTTTACAGTGGAGGAAGAGGATACCATAATAAGGCTACATAAGGCCTTTGGAAACAAATGGTCAAAGATTGCATCATATTTGCCTGGTAGAACTGATAATGAGATCAAGAATGTGTGGAACACACATTTAAAGAAAAAACTCATTGTCAAAAATTCAGAATCAACAAGTGGAGATGAATCCAAGTTAGAATCATCAATAACTTCACCTTCTTCATCAGAATCATTTTTATCAAATGAGGTACTAATGAAAGATTCTGAAAAACAAGTATCCAACAATGATGAACTTGTTATCAACAATGAGGAACCAAAAGGGTCATCATCAAATTCATTATCATCTTCAATTGAGTCAAATATATTGAACTCAAGTCAAATTATTGATAAAAAATTGCTTGAACAAGAATTGGCTTCTTTAGGAACTTTTGATATTGACAATATATTAGAAGAGATGGAAAATACAAATGATTTAATTGAAATTCCATGGGAATCAGATTATGATCTTTGGAATTTTATTGACAATATTGAATCTTATAATCAAATAAATGTTGGTGAAGAAAATGTTCAAAATAATGTTGTTGAAGCAAAAAAGTGGTCACATGATGAATTTGAGAATGAGTTTGGAGCATTAGGTGAAAAAAAGGAGTCAAACAAGAAGGATGAGGTCCTACCAAAGAATTGTGATGTTGAGCAAGAAATTATTCACCCTCATGAGGCATTTGATTTCAATGATATTATAATGTCTGATTCTGAATTAGACTTTGGTAATATTCAATTGTGGCCTTCTTGGCCTCAAAATAGTAGTCCTAAAGTTTAA 1023 0.3343 MGKGRAPCCDKSQVKRGPWSPAEDLKLIAFVQKFGHENWRSLPKQAGLQRCGKSCRLRWINYLRPDLKRGNFTVEEEDTIIRLHKAFGNKWSKIASYLPGRTDNEIKNVWNTHLKKKLIVKNSESTSGDESKLESSITSPSSSESFLSNEVLMKDSEKQVSNNDELVINNEEPKGSSSNSLSSSIESNILNSSQIIDKKLLEQELASLGTFDIDNILEEMENTNDLIEIPWESDYDLWNFIDNIESYNQINVGEENVQNNVVEAKKWSHDEFENEFGALGEKKESNKKDEVLPKNCDVEQEIIHPHEAFDFNDIIMSDSELDFGNIQLWPSWPQNSSPKV 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02827 340 SMART sant 68 116 IPR001005 -
Trre12g02827 340 SMART sant 15 65 IPR001005 -
Trre12g02827 340 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Trre12g02827 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Trre12g02827 340 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Trre12g02827 340 Gene3D - 70 138 - -
Trre12g02827 340 FunFam Transcription factor RAX3 9 69 - -
Trre12g02827 340 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Trre12g02827 340 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Trre12g02827 340 MobiDBLite consensus disorder prediction 125 146 - -
Trre12g02827 340 Gene3D - 16 68 - -
Trre12g02827 340 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Trre12g02827 340 CDD SANT 71 114 IPR001005 -
Trre12g02827 340 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 242 - -
Trre12g02827 340 CDD SANT 18 63 IPR001005 -
Trre12g02827 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02827 Trre-Chr12 35987175 35990736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02827 1 254 MYB Transcription Factor Family AT1G79180 48.097 6.14e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre12g02827 Myb_DNA-binding 1.5e-13 CL0123