Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02823 ATGAGCGGAGCGAAGGGAAAGAAGAAGGGAACAAGCTTCGTGACCGATTGCGCGAAGCCTATTGAAGACAAGATTATGGACATTGCTTCCCTCGAGAAGTTTCTTTACGAGAGGATTAAGGTTGGTGGTAAAGCTGGTGCCCTTGGTGATTCCGTCACCGTTACTCGTGAGAAGAGCAAAATCACCGTTACCTCCGATAGCAATTTCTCCAAAAGGTATCTGAAGTACTTAACCAAGAAGTACTTGAAAAAGCACAATGTGAGGGATAATTGGCTTCGGGTTATTGCCTCCAACAAGGACCGCAATGTCTATTAG 315 0.454 MSGAKGKKKGTSFVTDCAKPIEDKIMDIASLEKFLYERIKVGGKAGALGDSVTVTREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDNWLRVIASNKDRNVY 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02823 104 FunFam 60S ribosomal protein L22-2 1 104 - -
Trre12g02823 104 Pfam Ribosomal L22e protein family 9 100 IPR002671 GO:0003735|GO:0005840|GO:0006412
Trre12g02823 104 Gene3D - 1 104 IPR038526 -
Trre12g02823 104 PANTHER 60S RIBOSOMAL PROTEIN L22 3 104 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02823 Trre-Chr12 35732661 35732975 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02823 4 104 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 85.149 8.22e-49 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02823 K02891 - gmx:100500073 179.489