Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02822 ATGAGCGGAGCGAAGGGAAAGAAGAAGGGAACAAGCTTCGTGACCGATTGCGCGAAGCCTATTGAAGACAAGATTATGGACATTGCTTCCCTCGAGAAGTTTCTTTACGAGAGGATTAAGGTTGGTGGTAAAGCTGGTGCCCTTGGTGATTCCGTCACCGTTACTCGTGAGAAGAGCAAAATCACCGTTACCTCCGATAGCAATTTCTCCAAAAGATACTTCAACATTGCTGAGAATGAGGGTGAAGAGGAAGACTGA 258 0.4651 MSGAKGKKKGTSFVTDCAKPIEDKIMDIASLEKFLYERIKVGGKAGALGDSVTVTREKSKITVTSDSNFSKRYFNIAENEGEEED 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02822 85 Pfam Ribosomal L22e protein family 9 75 IPR002671 GO:0003735|GO:0005840|GO:0006412
Trre12g02822 85 Gene3D - 1 80 IPR038526 -
Trre12g02822 85 FunFam 60S ribosomal protein L22-2 1 74 - -
Trre12g02822 85 PANTHER 60S RIBOSOMAL PROTEIN L22 3 75 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02822 Trre-Chr12 35732613 35732975 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02822 4 85 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 60.345 1.54e-40 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02822 K02891 - gmx:100305544 142.895