Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02808 ATGAAGCAGTTAATTCGCCGTTTATCTCGAGTCTCCGACTCATCTCAGTACACACTACTTCGAAACGATTCAATTCATCGCCGGCAAACTGGCGGTAACCGTAGCCGGCGAGTTGAATCCTTTCGTCTTGTCTTGGCAAAGATCCGGAGATCTTCTTCCGCGGTTGTGCCGGAAGGACATGTTCCGATCTACGTCGGTGACGAGATGGAACGGTTTGTTGTTTCTGCGGAGATTCTAAATCATCCGATTTTTGTTAAGCTTTTGAATGAATCGGCGCAGGAATATGGTTATGAACAGAAAGGTGTGCTTCGGTTACCGTGTCATGTTTTCGTTTTTGAGCGCGTGGTTGAAGCGTTGCAGCTTGGACTCGACACGCGCCACATCAATCAACTTCTTAATTCGTCGGAAGAAGAATTCTGTTAA 423 0.4681 MKQLIRRLSRVSDSSQYTLLRNDSIHRRQTGGNRSRRVESFRLVLAKIRRSSSAVVPEGHVPIYVGDEMERFVVSAEILNHPIFVKLLNESAQEYGYEQKGVLRLPCHVFVFERVVEALQLGLDTRHINQLLNSSEEEFC 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02808 140 Pfam Auxin responsive protein 14 119 IPR003676 GO:0009733
Trre12g02808 140 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 46 115 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02808 Trre-Chr12 35387913 35388335 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02808 31 120 Calmodulin-binding Proteins AT2G24400 37.234 1.57e-15 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02808 K14488 - gmx:100793103 198.749