Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02806 ATGGCGTTGAACAAGATCGAACGCGGTCATCAGATGTACCGTGACGGACTCTACAAAGAGGCGTTAGGGTTCTACACGGAAGCAATCGCTGTGGCGAAAACGAATCCTCAGAAGATTGCTTTGCATAGTAATCGTGCTGCTTGTTTTCTTAAGCTTCATCATTTCAAGAAGGCAGCAGAAGAATGTACCTCGGTGCTTGAGCTTGATAGCAATCACAGTGGAGCATTGATGTTGCGAGCTCAAACACTAGTGACCTTGAAGGAGTACCATTCAGCACTTTTTGATGTCAACAGACTCTTGGAGTTGAATCCATCATCCGAGGTCTATCAAAATCTTCATGCTCGCCTGAAGACACAGTTGTCACTTGCTCCAATACCAGAATCAGAAGAGGAGTTTGAGGAACAGGAAGATGAGATGGCTGAGGTGATGCAAAAAAGAGAAGACAAGAAGGAAGAAATTCGACAGGTACATGTGGCAGCTTCTACTGTTAGGACAGTTCAAAAGGTTGAGCTTGGTAAAGGTGTTATTATTGAATGTGCTTCTAAAGAAACAGACCCCAAGTTTTCATCCAAACATGGAAGAGACCAAAACTACGAGCCTAAAAAGTCGACGACCGAGCATGTAGTTCCTAAAGCACAAAACAGGGAATCAGCCGAGCAACACAAAGGATGGCAAACAATTCCAAAACCAAAAGGGCATTCAGCCCTGGACTACGCACGGTGGGACAGTGTTGACGATGATTCTAGTGAAGATGATGATGAAGACGATGAATCTTTGCCCCAGTACCGTTTTCGTGTGAAAACAGTTGGTGTACGTCCTGTGAAATGA 828 0.4457 MALNKIERGHQMYRDGLYKEALGFYTEAIAVAKTNPQKIALHSNRAACFLKLHHFKKAAEECTSVLELDSNHSGALMLRAQTLVTLKEYHSALFDVNRLLELNPSSEVYQNLHARLKTQLSLAPIPESEEEFEEQEDEMAEVMQKREDKKEEIRQVHVAASTVRTVQKVELGKGVIIECASKETDPKFSSKHGRDQNYEPKKSTTEHVVPKAQNRESAEQHKGWQTIPKPKGHSALDYARWDSVDDDSSEDDDEDDESLPQYRFRVKTVGVRPVK 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02806 275 MobiDBLite consensus disorder prediction 185 261 - -
Trre12g02806 275 MobiDBLite consensus disorder prediction 185 218 - -
Trre12g02806 275 Gene3D Tetratricopeptide repeat domain 1 155 IPR011990 GO:0005515
Trre12g02806 275 SMART tpr_5 73 106 IPR019734 GO:0005515
Trre12g02806 275 SMART tpr_5 39 72 IPR019734 GO:0005515
Trre12g02806 275 SMART tpr_5 2 35 IPR019734 GO:0005515
Trre12g02806 275 SUPERFAMILY TPR-like 6 120 IPR011990 GO:0005515
Trre12g02806 275 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 2 275 - -
Trre12g02806 275 Coils Coil 125 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02806 Trre-Chr12 35364538 35368304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02806 2 120 Calmodulin-binding Proteins AT3G25230 32.824 3.78e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02806 - - gmx:100792046 399.053