Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02802 ATGGTTGATTGGCTTGTCGAGGTTACTGAGGAATATCAGTTAGTTCCAGACACACTTTACCTTGCTGTGAATCTCATTGATCGATTCCTTTCTCAGTGTTTGGTTACAAAACAAAGGTTCCAGTTGCTCGGTATCACTTGTATGCTGATTTGTAACAAAGCTATTCAATCACAAGTTCAGATCCATATTTGTAACAAAGCTTCAGATTCAGTATCTTCAGATTCTTCATTCAATCTACGTTTGTTCGTTCAACCTAAGGTTCAATTTTCGTTCAAATTCAATCTTCTTCACCCTAAGCTATTCAATCTTCATCTTCACCCTAAGATCCAGCTTCAATTTGATCAACCTAAGCTTCCGATTCAAACTCGTTTGTTCAACATAAGCTTCAGATTCTCCTCAAATTCTTTAATCAATCTTCAAAATCACATTCAGGCACATGACAAAAGTAATGAAGCATGGTCACAATTTGCTAGAAGGATATCTAGTGAATGGGATGGATTTAGAGCAGGTGGATGTGCCATTCATGATTCTGCTTTTGCTTCTACACCACCGATGACTGCCTCAGATATTGCTGGTATCTGGCAGGGATCTAAAGATGTCTCCACTTTTGGCACTGCAAACAGTAGAGGAATGGGCGACAAGGCTGTGAATCAACTTGATAAGTCAGTTAATTCAAAACTCGAAGTTACCGTAGCTAGGCAAATTCAAGCACGGTTTCAGACAACTGCCAAAGAGGCGCTTCAGGATGCACTCAAGTCCAGTTTTGAAACAATAGTGGTTCCTGCATTTGAGATGTCCTGCAAAGCCATGTTTGAGCAACAACACCTTGAATTGGGTCCTACTTCATTGGCAATGACACTAAGGGTATGGTCTTTGGTGAGGAGATTTGATCAGCCGCGGAAATATAAGGCGTTCATAAGCAGGTGTGTGGTGAGGGGAACCCTTGAGATTGGAAGTTTAAGAGAAGTTGATGTTAAGTCGGGGCTTCCTGCTACAACTAGTACTGAATGA 1011 0.4095 MVDWLVEVTEEYQLVPDTLYLAVNLIDRFLSQCLVTKQRFQLLGITCMLICNKAIQSQVQIHICNKASDSVSSDSSFNLRLFVQPKVQFSFKFNLLHPKLFNLHLHPKIQLQFDQPKLPIQTRLFNISFRFSSNSLINLQNHIQAHDKSNEAWSQFARRISSEWDGFRAGGCAIHDSAFASTPPMTASDIAGIWQGSKDVSTFGTANSRGMGDKAVNQLDKSVNSKLEVTVARQIQARFQTTAKEALQDALKSSFETIVVPAFEMSCKAMFEQQHLELGPTSLAMTLRVWSLVRRFDQPRKYKAFISRCVVRGTLEIGSLREVDVKSGLPATTSTE 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02802 336 SUPERFAMILY Cyclin-like 1 56 IPR036915 -
Trre12g02802 336 SMART cyclin_7 3 98 IPR013763 -
Trre12g02802 336 Pfam Cyclin, N-terminal domain 1 57 IPR006671 -
Trre12g02802 336 Gene3D - 282 336 IPR023393 -
Trre12g02802 336 SUPERFAMILY Bet v1-like 288 336 - -
Trre12g02802 336 Gene3D - 1 54 - -
Trre12g02802 336 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 195 273 IPR045152 GO:0031087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02802 Trre-Chr12 35288517 35291434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02802 1 53 Core Cell Cycle Gene Families AT5G25380 69.811 2.50e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02802 K12616 - gmx:100798228 123.635