Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02797 ATGGCTTCTTCAATCCCTCATCACTATTATTCAAACTACACCTCTGATCATTTCACCACACAACAAGGTTTGTCTTCACATAATAATAACATTATTAATACCTCAATTTTGGACAATACTATGATGTGGGGTTTTCAAGAAAATTTAATGCCTGTTTTTGATAATTATGGAGCATTTGATCAAATTGTGTCACTTGATTGTGATACTATGTCTTCTTCTCGTGCTTGGATTCATCCAAATTTTGTCGAGCAACAAGATTTCGCTGTTCCGGCTTTGTTGTCAGATTGTAAATTGGGATTTTATGGTGGTGGGATTCAGAATTTTAATGGAAGATATAATAATCAGCCACCTATTGGTCATGAGTTTGTAGAAGATCAATGTTGTGGTTTTGTTGAAGATATTAAACCACCTCCACCTTATCCTAATGCTGCAAGAGAAAATTGGGGGATACAAGGTAATCAAATAACAGCGGTTGAAGAACCAAACATAAAGGTGGGAAGGTACTCAGAAGAAGAAAGGAAAGAAAGAATTCTTCGATATTTGAAGAAAAGAAACCAAAGAAATTTCAACAAAACTATCAAGTATGCATGTCGGAAAACTTTAGCCGATAGAAGAGTGAGAGTGAGAGGAAGGTTTGCAAGGAACAATGAGATATGTGAAGAAGATCACATGGCCACAAAAAAGCTTGAGAATCATCATGATGATCACATCAATGATGACTTTTATGGTTCTGATTCATTCCAATTCCAGTTAAAGAATGAGGAGGAGGACTGGCTTCAAGAGGCTATGGCAAGTTTGGTGTATTTATCTCATTCATCACCGGATGATATGTGA 834 0.3621 MASSIPHHYYSNYTSDHFTTQQGLSSHNNNIINTSILDNTMMWGFQENLMPVFDNYGAFDQIVSLDCDTMSSSRAWIHPNFVEQQDFAVPALLSDCKLGFYGGGIQNFNGRYNNQPPIGHEFVEDQCCGFVEDIKPPPPYPNAARENWGIQGNQITAVEEPNIKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNEICEEDHMATKKLENHHDDHINDDFYGSDSFQFQLKNEEEDWLQEAMASLVYLSHSSPDDM 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02797 277 ProSiteProfiles CCT domain profile. 173 215 IPR010402 GO:0005515
Trre12g02797 277 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 131 226 IPR045281 GO:0009909
Trre12g02797 277 Pfam CCT motif 173 215 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02797 Trre-Chr12 34869203 34871641 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02797 169 225 C2C2-CO-like Transcription Factor Family AT5G15850 45.614 1.10e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre12g02797 CCT 8.6e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02797 - - cam:101492034 424.861