Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02796 ATGCCCCTATCTCCTTCTTCCATGGCTTCTTCAATCCCTCATCACTATTATTCAAACTACACCTCTGATCATTTCACCACACAACAAGGTTTGTCTTCACATAATAATAACATTATTAATACCTCAATTTTGGACAATACTATGATGTGGGGTTTTCAAGAAAATTTAATGCCTGTTTTTGATAATTATGGAGCATTTGATCAAATTGTGTCACTTGATTGTGATACTATGTCTTCTTCTCGTGCTTGGATTCATCCAAATTTTGTCGAGCAACAAGATTTCGCTGTTCCGGCTTTGTTGTCAGATTGTAAATTGGGATTTTATGGTGGTGGGATTCAGAATTTTAATGGAAGATATAATAATCAGCCACCTATTGGTCATGAGTTTGTAGAAGATCAATGTTGTGGTTTTGTTGAAGATATTAAACCACCTCCACCTTATCCTAATGCTGCAAGAGAAAATTGGGGGATACAAGGTAATCAAATAACAGCGGTTGAAGAACCAAACATAAAGGTGGGAAGGTACTCAGAAGAAGAAAGGAAAGAAAGAATTCTTCGATATTTGAAGAAAAGAAACCAAAGAAATTTCAACAAAACTATCAAGTATGCATGTCGGAAAACTTTAGCCGATAGAAGAGTGAGAGTGAGAGGAAGGTTTGCAAGGAACAATGAGATATGTGAAGAAGATCACATGGCCACAAAAAAGCTTGAGAATCATCATGATGATCACATCAATGATGACTTTTATGGTTCTGATTCATTCCAATTCCAGTTAAAGAATGAGGAGGAGGACTGGCTTCAAGAGGCTATGGCAAGTTTGGTGTATTTATCTCATTCATCACCGGATGATATGTGA 855 0.3661 MPLSPSSMASSIPHHYYSNYTSDHFTTQQGLSSHNNNIINTSILDNTMMWGFQENLMPVFDNYGAFDQIVSLDCDTMSSSRAWIHPNFVEQQDFAVPALLSDCKLGFYGGGIQNFNGRYNNQPPIGHEFVEDQCCGFVEDIKPPPPYPNAARENWGIQGNQITAVEEPNIKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNEICEEDHMATKKLENHHDDHINDDFYGSDSFQFQLKNEEEDWLQEAMASLVYLSHSSPDDM 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02796 284 ProSiteProfiles CCT domain profile. 180 222 IPR010402 GO:0005515
Trre12g02796 284 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 138 233 IPR045281 GO:0009909
Trre12g02796 284 Pfam CCT motif 180 222 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02796 Trre-Chr12 34869203 34871662 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02796 176 232 C2C2-CO-like Transcription Factor Family AT5G15850 45.614 1.03e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre12g02796 CCT 8.9e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02796 - - cam:101492034 431.409