Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02793 ATGGTATATGAAGCAAATGCAAGAGTAAGGGACCCTGTTTATGGATGTGTAGGAGCCATATCCTCTCTACAGCAACAAGTTGATGTTCTTCAAACTCAATTAGCACAAGCACAAGCAGAGGTTGTGTACATGAAAATGCACCAATTGTCATCACCAAATCAACACCAACCATCATATTTTCTTGCTCCAGCTGCCTCCAATTCATCACCATCATCAGAAAATGTGTACCAATCAAGCAGGCTGGTTTCTTCACACATGAACATTGACCAATATTCCTTATGGTCATACTAG 291 0.4055 MVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLAQAQAEVVYMKMHQLSSPNQHQPSYFLAPAASNSSPSSENVYQSSRLVSSHMNIDQYSLWSY 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02793 96 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 67 - -
Trre12g02793 96 ProSiteProfiles LOB domain profile. 1 41 IPR004883 -
Trre12g02793 96 Coils Coil 96 96 - -
Trre12g02793 96 Coils Coil 20 40 - -
Trre12g02793 96 Pfam Lateral organ boundaries (LOB) domain 1 38 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02793 Trre-Chr12 34697896 34698186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02793 1 95 AS2 family AT1G16530 42.708 5.04e-20 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre12g02793 M_domain 6.2e-06 No_clan