Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02792 ATGAAAGGTGGTGGGAGAAAACAAGGTGCAATGTCACCATGTGCTGCATGCAAGCTTCTACGAAGGAGATGTGCTAAAGATTGTGTCTTTGCTCCATATTTTCCAGCTGATGAACCTCACAAGTTTGGTAGTGTCCACAAGGTTTTTGGAGCTAGCAATGTGAACAAAATGTTACAGGTTCAGATTAAATTCATGCACCTTATCTTTCCTATCTCTATCATGTCATCATCACCATGA 237 0.4093 MKGGGRKQGAMSPCAACKLLRRRCAKDCVFAPYFPADEPHKFGSVHKVFGASNVNKMLQVQIKFMHLIFPISIMSSSP 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02792 78 ProSiteProfiles LOB domain profile. 12 78 IPR004883 -
Trre12g02792 78 Pfam Lateral organ boundaries (LOB) domain 13 59 IPR004883 -
Trre12g02792 78 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02792 Trre-Chr12 34677300 34677536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02792 1 59 AS2 family AT1G31320 83.051 1.12e-32 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre12g02792 LOB 1.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02792 - - mdm:103445802 120.553