Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02776 ATGGATCATAGTGAATATGTTGTTGATGATGATGAAGATGTTCCACTTCCTGGATTTAGATTCCATCCAACTGATGAAGAACTTGTTACTTTTTATCTTCGAAGGAAACTTGATAAGAAACCTATTGCTATTGATCTCATCAAACAAATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAATCAAGTGTACCTGGAGCTGAGAAGGAAGCTTATTTTTTTTGCAAAAGAGGGAGAAAATACAAGAACAGCATAAGGCCAAATAGAGTAACTGGCTCTGGATTTTGGAAAGCAACAGGAATAGACAAACCAATTTACTCAAATGGAGGAGAAGGAAATAATTGTGTTGGACTCAAAAAAACACTTGTTTACTACCGTGGTAGTGCTGGCAAAGGCACCAAAACTGATTGGATGATGCATGAATTTCGTTTACCATCTAAAATTATTGATGCCAACACAAATCTTCCATATGCTAAGACTATTGATGTTGATAATGCTCATGAAGCTGAAATTTGGACATTGTGTAGAATTTTCAAGAGAAATGTATCACAAAGGAAACCACAAATGGCAGAGGTGAAACAGTTTGCTACCAAGCGTCAAACCATTCAAGAAAAAAGAAGTAGAATGGACAACAATATAGAGTTCAACATAAATCAACAAACATATATCAATTTTGGTGCAAGCCATGAGCAACATCACCACAATGAAGACAAACCAATTAATAACTATGCAATAAGTGATCAAAGTAATCAGTTTCATGTAGATGAGTTGAGCTCTTCAGTTTCACATCAACCTCAACAAAATAATGTAACACAATATTCAAATTTTTGGATTAACCAAGCTGCAAATGAGTTATTATCATTTGATAATTGGGATGAGCTTGGATCAGTTGTGAAGTTTGCTGTTGATTCACCTAGTTTGTAA 927 0.3463 MDHSEYVVDDDEDVPLPGFRFHPTDEELVTFYLRRKLDKKPIAIDLIKQIDIYKYDPWDLPKSSVPGAEKEAYFFCKRGRKYKNSIRPNRVTGSGFWKATGIDKPIYSNGGEGNNCVGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSKIIDANTNLPYAKTIDVDNAHEAEIWTLCRIFKRNVSQRKPQMAEVKQFATKRQTIQEKRSRMDNNIEFNINQQTYINFGASHEQHHHNEDKPINNYAISDQSNQFHVDELSSSVSHQPQQNNVTQYSNFWINQAANELLSFDNWDELGSVVKFAVDSPSL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02776 308 SUPERFAMILY NAC domain 15 181 IPR036093 GO:0003677|GO:0006355
Trre12g02776 308 FunFam NAC domain-containing protein 35 24 184 - -
Trre12g02776 308 Pfam No apical meristem (NAM) protein 17 145 IPR003441 GO:0003677|GO:0006355
Trre12g02776 308 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 263 - -
Trre12g02776 308 Gene3D NAC domain 24 185 IPR036093 GO:0003677|GO:0006355
Trre12g02776 308 ProSiteProfiles NAC domain profile. 15 181 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02776 Trre-Chr12 34290111 34292398 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02776 12 235 NAC Transcription Factor Family AT1G26870 51.770 1.67e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre12g02776 NAM 1.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02776 - - gmx:100790471 431.409