Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02775 ATGGGTGTTAACGAAGATTTCAACATGGATCATAGTGAATATGTTGTTGATGATGATGAAGATGTTCCACTTCCTGGATTTAGATTCCATCCAACTGATGAAGAACTTGTTACTTTTTATCTTCGAAGGAAACTTGATAAGAAACCTATTGCTATTGATCTCATCAAACAAATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAATCAAGTGTACCTGGAGCTGAGAAGGAAGCTTATTTTTTTTGCAAAAGAGGGAGAAAATACAAGAACAGCATAAGGCCAAATAGAGTAACTGGCTCTGGATTTTGGAAAGCAACAGGAATAGACAAACCAATTTACTCAAATGGAGGAGAAGGAAATAATTGTGTTGGACTCAAAAAAACACTTGTTTACTACCGTGGTAGTGCTGGCAAAGGCACCAAAACTGATTGGATGATGCATGAATTTCGTTTACCATCTAAAATTATTGATGCCAACACAAATCTTCCATATGCTAAGACTATTGATGTTGATAATGCTCATGAAGCTGAAATTTGGACATTGTGTAGAATTTTCAAGAGAAATGTATCACAAAGGAAACCACAAATGGCAGAGGTGAAACAGTTTGCTACCAAGCGTCAAACCATTCAAGAAAAAAGAAGTAGAATGGACAACAATATAGAGTTCAACATAAATCAACAAACATATATCAATTTTGGTGCAAGCCATGAGCAACATCACCACAATGAAGACAAACCAATTAATAACTATGCAATAAGTGATCAAAGTAATCAGTTTCATGTAGATGAGTTGAGCTCTTCAGTTTCACATCAACCTCAACAAAATAATGTAACACAATATTCAAATTTTTGGATTAACCAAGCTGCAAATGAGTTATTATCATTTGATAATTGGGATGAGCTTGGATCAGTTGTGAAGTTTGCTGTTGATTCACCTAGTTTGTAA 951 0.347 MGVNEDFNMDHSEYVVDDDEDVPLPGFRFHPTDEELVTFYLRRKLDKKPIAIDLIKQIDIYKYDPWDLPKSSVPGAEKEAYFFCKRGRKYKNSIRPNRVTGSGFWKATGIDKPIYSNGGEGNNCVGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSKIIDANTNLPYAKTIDVDNAHEAEIWTLCRIFKRNVSQRKPQMAEVKQFATKRQTIQEKRSRMDNNIEFNINQQTYINFGASHEQHHHNEDKPINNYAISDQSNQFHVDELSSSVSHQPQQNNVTQYSNFWINQAANELLSFDNWDELGSVVKFAVDSPSL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02775 316 Gene3D NAC domain 32 193 IPR036093 GO:0003677|GO:0006355
Trre12g02775 316 Pfam No apical meristem (NAM) protein 25 153 IPR003441 GO:0003677|GO:0006355
Trre12g02775 316 FunFam NAC domain-containing protein 35 32 192 - -
Trre12g02775 316 SUPERFAMILY NAC domain 23 189 IPR036093 GO:0003677|GO:0006355
Trre12g02775 316 ProSiteProfiles NAC domain profile. 23 189 IPR003441 GO:0003677|GO:0006355
Trre12g02775 316 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02775 Trre-Chr12 34290111 34292422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02775 20 243 NAC Transcription Factor Family AT1G26870 51.770 1.39e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre12g02775 NAM 1.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02775 - - gmx:100790471 442.58