Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02765 ATGGCTTCTAATACTACAAAACCAGAAGATTTTCCTCTAGTATTAAGGGATATAATTCCGGAATATGCTGGGGCTCTTGTTATTAATATTGGCGATATTTTGCAGCTAGTAACAAATGACAGATTCAAGAGTGCTAAACACAGAGTTACGAATGATATATTTGTGCGCAATTGTTTCGCTGTTCTCTCAGAGATCAAGAAACCGAAAGATACACCTTTTTGCTACGGAGCGTCAAGTAAAGAGCTTACATGTGCCATCTCTTTTGAAAAATATCCTCGTTCTGGGATCGAAATGGCTTCTTGTGGTCACCCATACAGTTTCTCATGCTGGGAAGGATATATCAGTACGTCCATTAATGACGGTCCCAAATGTTTGATATTAAGATGCCCTGATCCCAATTGTGGTGCTTCTATTGGTCAAAATATGATTGATTTATTAGCATCTAATGAAGATAAACAAAAGTATGGCTGTTACCTTGTTAGATCTTATATCGATGACAATAAAAAGTCAAAGTGGTGTCCTGCCCCTGGTTGTGAATATGCAGTTGCTTTTGATGCTGGAGGTGAAAATTATGATGTCTCTTGCCTCTATTCATATAGGTTTTGTTGGAATTGCACTGAGGTTCATCGTTCAGTAGACTGTGGCACGGTGCCACATCTCGAAGCCACGCATCTTCCAGGTAGCGGCCGGCATTACTTCTCCTTCCTCGTCTCTGATTACCGCTCCCAGACCCCACGTGCCGGCCATAGACAGGTGTTCATCGCAATTGACCTTGTAAACACCACGGACAGTGCACCTGGATTTAACTCAAAGTTCACTTCCCTCTCGCTGGACAGACCTATCCTCGATTACTTAATTAATAACTTCATGTTCGCTTTTGGTAGCCGCTGTTGTAATCTTCAGCTTGCTGCTAGCTACCATTAA 924 0.4188 MASNTTKPEDFPLVLRDIIPEYAGALVINIGDILQLVTNDRFKSAKHRVTNDIFVRNCFAVLSEIKKPKDTPFCYGASSKELTCAISFEKYPRSGIEMASCGHPYSFSCWEGYISTSINDGPKCLILRCPDPNCGASIGQNMIDLLASNEDKQKYGCYLVRSYIDDNKKSKWCPAPGCEYAVAFDAGGENYDVSCLYSYRFCWNCTEVHRSVDCGTVPHLEATHLPGSGRHYFSFLVSDYRSQTPRAGHRQVFIAIDLVNTTDSAPGFNSKFTSLSLDRPILDYLINNFMFAFGSRCCNLQLAASYH 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02765 307 Gene3D - 16 77 IPR027443 -
Trre12g02765 307 SMART ibrneu5 153 214 IPR002867 GO:0008270
Trre12g02765 307 CDD BRcat_RBR_ANKIB1 160 217 - -
Trre12g02765 307 Pfam IBR domain, a half RING-finger domain 153 214 IPR002867 GO:0008270
Trre12g02765 307 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 72 216 IPR031127 GO:0004842|GO:0016567
Trre12g02765 307 SUPERFAMILY RING/U-box 154 216 - -
Trre12g02765 307 ProSiteProfiles TRIAD supradomain profile. 80 307 IPR044066 -
Trre12g02765 307 FunFam RBR-type E3 ubiquitin transferase 78 167 - -
Trre12g02765 307 SUPERFAMILY RING/U-box 79 162 - -
Trre12g02765 307 SUPERFAMILY Clavaminate synthase-like 20 52 - -
Trre12g02765 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 165 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02765 Trre-Chr12 33870272 33877772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02765 25 217 C3H Transcription Factor Family AT2G31510 49.500 9.71e-61 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02765 K11968 - gmx:100784195 244.202