Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02758 ATGGATTTCTTTGTTGATAATCGTTACCAAGATCTTATTTCTGTTGATTCCACTAAAGGTAATGCAATCTATGAACTTAGGGTTCTTAGAAAATGGAAAGTTGTTGATTTAAACAAGCCTAGCACTATAGGTTGTGTTGATTTGGTCCTCATTGATATACATGATATTAAGATTCAAGCTACAATTCCAAAGAAACTTGTGACTGTTTTTGATGAAAAGATTATGGAGGGTAGGGTGTATCGTATATCATCTGTTGATGTGAGGTTTAACTTTGGTACCCTTCTTCCAAGTTATCATAGGTATAAGTTTTACTTCATTGATGAAACTGTTGTTGAACCATCTACCAATAGTTTTATTCCTGCTATTGGTTTTTCTTTGGTTGAGGCTGCTGATATTAGGAAAAAAGGAAGCACCTTTAGGTATTTGGTTGATGTTGTTGGTTTTATTACACCTGCTATTCATGACAAGAATTTTTTTCCTGATGGAACAATGTCTCAAACTGTTACTTTTAAGATTAACGATGAAAGGAGATCATTATTGTGTGAGTTTTCAGGTAAACTCGTGGATGAATTTGTTAATAGCTTGAAGTCTTGTGCTGATGGTCTCCCAATTCTTGTGCTGCAGTTTGTTAAAATTGGAAGATCACAAGGTTCTGTTTTAATTGAAGGGATTGAAGGGGTCACAAGGTTTTTTGTTGATCCAATGGTTGTTGGAGTGTTAAATTTCAAGAAATGTATGGTGCAGTATTTGACTAAAAACTTGGATTATACCGGTCTCTAA 780 0.3436 MDFFVDNRYQDLISVDSTKGNAIYELRVLRKWKVVDLNKPSTIGCVDLVLIDIHDIKIQATIPKKLVTVFDEKIMEGRVYRISSVDVRFNFGTLLPSYHRYKFYFIDETVVEPSTNSFIPAIGFSLVEAADIRKKGSTFRYLVDVVGFITPAIHDKNFFPDGTMSQTVTFKINDERRSLLCEFSGKLVDEFVNSLKSCADGLPILVLQFVKIGRSQGSVLIEGIEGVTRFFVDPMVVGVLNFKKCMVQYLTKNLDYTGL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02758 259 Pfam Domain of unknown function DUF223 48 117 IPR003871 -
Trre12g02758 259 SUPERFAMILY Nucleic acid-binding proteins 27 115 IPR012340 -
Trre12g02758 259 CDD RPA1_DBD_A_like 27 111 - -
Trre12g02758 259 Gene3D - 8 113 IPR012340 -
Trre12g02758 259 Gene3D - 119 251 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02758 Trre-Chr12 33522871 33524118 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02758 8 217 Core DNA Replication Machinery Family AT5G08020 23.982 1.87e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02758 - - tpra:123914763 253.447