Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02709 ATGGCGAAACCTGGCCGAGCTCGTCGCTCACCACCGTCGGGTTCCGCCTCAGGATCTTCTTCTCTCTCCTCCTCTTCTCGTTCCTCTTCTCGCTCTCGCTCTCGCTCCCGCTCCCGTTCCAGATCTTTCTCTTCCTCCTCATCTCCCTCCCGCAGTTCCAAGAGCCGTAGCCGTAGTCCTCCTCCTCAGAGACGCAAAAGTCCTGGTGAACCAGCTAGGCGAGGTCGATCTCCTCCTCTTCCTCCCCCTCCCCAGTCTAAGAGAACTTCTTCTCCCCCAAGGAAACTTTCCCCTGTACGAGAGTCTCTTGTTCTGCACGTAGAAAAACTCAGCAGGAATGTCAATGAAGGCCATTTGAAAGAAATCTTTAGTAATTTTGGTGAGGTCGTAAGTGTGGAGTTGGTGATGGATCGAGTTGTCAATCTTCCAAAAGGATATGGATATGTGCATTTCAAGACAAGAGGGGATGCTGAAAAAGCATTATTGTACATGGATGGCGCCCAAATAGATGGCAACGTCATTAAGGCAAGATTTACTCTGCCTCCAAGACAGAAAGTTTCACCACCCCCAAAGGCTTCTGCTGTTGTTCCAAAGAGAGATGGACCTAGGGCTGATAATGCTGGTGCAGATGTTGAAAAAGATGGGCCAAAGCGTCTAAGAGAATCTTCTCCCCGGAGGAAACCTCTCTCACCACGGAGAAGATCTCCTGTGCCTCGAAGAGCTGGATCTCCAAGACGACCTGAATCTCCTCGCCGCCGTGCAGATTCTCCTGTCCGTCGTCGATTAGACTCTCCTTATCGCCGTGGAGCTGGAGACACACCTCCTAGGAGGAGACCCATGTCTCCCGGAAAAGGTCGTTCTCCATCTCCACCACCAAGGCGCTTTAGGTCCCCTGCAAGGGTCTCGCCTAGAAGGATGCGTGGAAGCCCAGGTCGGAGACGTTCTCCTCCTCCACCTCTAAGACGCCGTTCACCTCCTAGACGAGCTCGTAGTCCTCCTAGAAGATCTCCAGTTGGTCGTAGGCGTAGTCGCTCTCCAATACGTAGGTCTGCACGCTCACGCTCTAGATCATTCTCACCGCGCAGAGGTCGACCACCTGTGAGACGGGGAAGGTCATCATCCTACTCTGATTCACCAAGTCCTCGCAAGGTGTCTCGGAGATCAAAGAGTCGCAGTCCAAGAAGGCCTTTGAAGGGAAGAGCCAGTAGCAACAGTAGCAGCAGTGGTTCACCACCCCCGGCTCGCAAACCATAG 1254 0.5327 MAKPGRARRSPPSGSASGSSSLSSSSRSSSRSRSRSRSRSRSFSSSSSPSRSSKSRSRSPPPQRRKSPGEPARRGRSPPLPPPPQSKRTSSPPRKLSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELVMDRVVNLPKGYGYVHFKTRGDAEKALLYMDGAQIDGNVIKARFTLPPRQKVSPPPKASAVVPKRDGPRADNAGADVEKDGPKRLRESSPRRKPLSPRRRSPVPRRAGSPRRPESPRRRADSPVRRRLDSPYRRGAGDTPPRRRPMSPGKGRSPSPPPRRFRSPARVSPRRMRGSPGRRRSPPPPLRRRSPPRRARSPPRRSPVGRRRSRSPIRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLKGRASSNSSSSGSPPPARKP 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02709 417 FunFam Serine/arginine-rich splicing factor SR45 3 188 - -
Trre12g02709 417 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 6 264 - -
Trre12g02709 417 MobiDBLite consensus disorder prediction 298 368 - -
Trre12g02709 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 181 IPR000504 GO:0003723
Trre12g02709 417 MobiDBLite consensus disorder prediction 244 274 - -
Trre12g02709 417 MobiDBLite consensus disorder prediction 397 417 - -
Trre12g02709 417 MobiDBLite consensus disorder prediction 203 228 - -
Trre12g02709 417 SUPERFAMILY RNA-binding domain, RBD 34 178 IPR035979 GO:0003676
Trre12g02709 417 CDD RRM_RNPS1 105 177 IPR034201 -
Trre12g02709 417 MobiDBLite consensus disorder prediction 180 417 - -
Trre12g02709 417 Gene3D - 13 187 IPR012677 -
Trre12g02709 417 SMART rrm1_1 104 177 IPR000504 GO:0003723
Trre12g02709 417 MobiDBLite consensus disorder prediction 1 100 - -
Trre12g02709 417 MobiDBLite consensus disorder prediction 39 57 - -
Trre12g02709 417 MobiDBLite consensus disorder prediction 74 89 - -
Trre12g02709 417 MobiDBLite consensus disorder prediction 12 31 - -
Trre12g02709 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 175 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02709 Trre-Chr12 32756038 32763831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02709 105 178 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 1.47e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02709 K14325 - gmx:100783566 282.722