Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02699 ATGAAATCATCAACAAGAGAGAAAGAAAACGATCGGAGCTTGAGTTCGCACATCCTCACCCTCCACCGCCGTCTTCTCCACGCCTTAAACCTTGGCACCAGATATTTTGATGACAAGACAAATCAATGGAAGTGGCAGTCCGTTAACATTGAAGTGCAGAAAAATGTACTTCGATCAATTACTGCTTTTCTTGATTCTATATCCGCTGATGCACGTGCCACACGCCATACAATTGTTAAGGAATCTGCTGCTGATATTTTGGGAGCATTGTTATGGATTCTTCAATGCAAAAATGAGCCCTTGTTAAGCATGGCATCAAATGTGGCAGTGAAGTTAGTTAGTGTTTTACCTAGTCAACTATTGCAATTGCGTATGCTGGATCTTGTCTATTGTCTATCATCTTTGCTATCTTCACATCAAGTAGAAGTTGCAATACCCTGTGCTACTGCTTTGAATTCGATTATCTCAAGTCTGAGTGCTACAAGCGAGAAGGCAGTTATTGAAGCACTGAAAGAAACAGAGATTTCCATTTGCATCGTTCGTAATATAAAAGACTGCAGTGGGAAGAAAATTGAATATTTTCTGGAGATGGCTTCACTTTTGAGCACAATTCTGTTAAGATGGCCTTCATCTAGGTTCCCTGTTTGTAATGATGTTGAACTCATGAAAGTCTTAGCAAACATGCATACAAAGACAGATAGTTATATTAAACTTGTTCTTCTAAAGCTGTACACATCTTTAGCTTTATGTGATTCTGTAACACAAAAACTTATAGAGGATGGAAAAGTGTTTCTACAAATGATTGTGCAGGCGATGGGAAAATCAAGCCCTCATGATGTTCGGATAGAGGGGTTTCGGCTTGCTCAATGTCTATTGAGATCTCAAGAAAATTGTTTAAAAGTGATGGATTTGTGTGGTGAAGCTCTTGTTGATGCCATAATTTGTGGTATGAGAGAGACAGGGCCGTGTTCCAAAAAAATTGAGAACAACTATGGTTCTGTATTAGTGGAAGCATGTAAGTTGGCTCTAATTACTCGTTGGGCTGGCGATCATCATATCAAGTTTTGGAAACAAGGAATTGAGAAAGTCCTCCTTAATCTTCTGATTGAAAATATTCATAACCAATCATCTGAATTTGTCTTCTCATTGGAAAAACAAATATCCATGGTGAAGGAGGGACTGAAAGTCAATCATCATGTTGCTCTGAGAAGTTATGTGTGGGACATTCTTGGGTGGCTTACAATTCATTGTGGAGAAAATTCAAACCCTTATGGTTATACACAGGAGAGTGAACTCCACATCAACTTACTAATTCTGTGTGCATGCTTCACTTTTGTGGATGTAATTCAAAAATGGTGCCGGATATGTCAAAATGATGTTGATGATAATTTTCAAAGTGAACCAGTATCAAGGGCTGTTCTAATGATGATATATTCTCCATGTAATTATATTTCCTCACATGCTAGATTTGTATTATCTGATATACTGAAGGTCAAAGGAGATCTGTGCTTGAAAAACTCACTACATACCCTAGATTATATGTCATCCCTGAAAAGCTATAGTTCATTTGATAAACTTCAACTTGTTATCAACTTAATTGGGTTAACTTGTCTTTCAAGTTTACCACAGTATCAAAGATGTATCATAGAAAGCAGAGGAATACAGCCTGTTGTTCTTCTCGTGCAACGATGCTTAAATAATGATATTCATGTAGAAAGGCCTGAAGTTGCTCCCCATTTGCATAATGTATTCCATAAAAGGTCTTGTTGCTGGATTGGTAAAGGAGATTGGGAAGGTTCCAATGTTCTCTTATTTTATGGCCTGTGGGGCTTAGCTGAATTTCTTTATCAGTGTGGCCTTTTACAAGACAATCCTCAGCAATTTACTAAAGAGGTGGCAAACATTAAAACTCAGTTAATTAACAAACTTCATGAGATCTGTAGTAGTACTTCTTTCAGTCCTGGAGCGAAATGGTATGTTTCTTATATTCTAAGTTATTTTGGATTTTACGGTTTCCCAAATGAATATTCCAAAAGGATTGGGATATCTTTTAATAAGGAAGAATATGCAGATTTCCAACTCATTGTAGCAAATGGGGATTCTGTGAGTGTTCATGGTGTTATTCTTGCTGTTCGATGTCCATCAATTCTACCTTCTAAAATGTTATCTAGTAGTAAGAGTTCTAAACAAATAACAGATAATTTTGTTGGAGAGACCGTGCGAGAAGTTCGCTATTCTTCTCACGTTGATTATGAAGCATTGTTGTTATTGTTGGAATATGTATATCTTGGGCGCTTGCATGCAGCAGAAGAAGAAACTGTGAAGAAGCTCAAAATTCTTGCTAAGCGTTGCAATCTACAGCCTCTCTTGCAAATGCTTTGCAGACAATCTCCAAAGTGGGGCACACCTTTCCCCAGCTTCAGTCTTACTTCATCTCTTGATTCAGCTGGAAGTTATTTTTCAGATGTCATTATGGAAGCTAAATTGAATGAGATTGTTGGATGGGCATGTAATATCTGTTCTCATCCCGTACCACATTTGCATGTTCACAAAGTCATATTGCAATCTGGCTGTGATTATCTACAGGGTTTGTTCAGATCAGGAATGCAAGAGAGTCATTCACAAGCCATAAAGGTTGATATTAGCTGGGAAGCATTGATTAAACTGGTGCATTGGTTTTATTCTGATGAGCTGCCGAATCCCCCTTCTGGTTGTTTGTGGTTTAACATGGATGATCAAGAAAAGCTATTCAATTTGCAACCATATGTGGAGCTTTGTTGGCTTGCTGAGTTCTGGATTATGGAAAGTATTCAAGAAGCCTGCTGGAATGTGATTATGTCTTGTCTTGACTCTTCTAAGCAGTTGTCCATTAAAATAATCAAAATGGCTTATAAGCTCTCTTTGTGGAAGTTGGTTGACATTGCCGCAAATCTCATGGCTCCTTCATATAGGCAATTTCGGGATTCAGGTGAACTTGAAGAAGTTGATGATGCACTAGTTCACTTCATTTATTCTGCTTCTATTGAACTTAACCACGAAGGTGAGAAACGCTTTAGGTGA 3060 0.3801 MKSSTREKENDRSLSSHILTLHRRLLHALNLGTRYFDDKTNQWKWQSVNIEVQKNVLRSITAFLDSISADARATRHTIVKESAADILGALLWILQCKNEPLLSMASNVAVKLVSVLPSQLLQLRMLDLVYCLSSLLSSHQVEVAIPCATALNSIISSLSATSEKAVIEALKETEISICIVRNIKDCSGKKIEYFLEMASLLSTILLRWPSSRFPVCNDVELMKVLANMHTKTDSYIKLVLLKLYTSLALCDSVTQKLIEDGKVFLQMIVQAMGKSSPHDVRIEGFRLAQCLLRSQENCLKVMDLCGEALVDAIICGMRETGPCSKKIENNYGSVLVEACKLALITRWAGDHHIKFWKQGIEKVLLNLLIENIHNQSSEFVFSLEKQISMVKEGLKVNHHVALRSYVWDILGWLTIHCGENSNPYGYTQESELHINLLILCACFTFVDVIQKWCRICQNDVDDNFQSEPVSRAVLMMIYSPCNYISSHARFVLSDILKVKGDLCLKNSLHTLDYMSSLKSYSSFDKLQLVINLIGLTCLSSLPQYQRCIIESRGIQPVVLLVQRCLNNDIHVERPEVAPHLHNVFHKRSCCWIGKGDWEGSNVLLFYGLWGLAEFLYQCGLLQDNPQQFTKEVANIKTQLINKLHEICSSTSFSPGAKWYVSYILSYFGFYGFPNEYSKRIGISFNKEEYADFQLIVANGDSVSVHGVILAVRCPSILPSKMLSSSKSSKQITDNFVGETVREVRYSSHVDYEALLLLLEYVYLGRLHAAEEETVKKLKILAKRCNLQPLLQMLCRQSPKWGTPFPSFSLTSSLDSAGSYFSDVIMEAKLNEIVGWACNICSHPVPHLHVHKVILQSGCDYLQGLFRSGMQESHSQAIKVDISWEALIKLVHWFYSDELPNPPSGCLWFNMDDQEKLFNLQPYVELCWLAEFWIMESIQEACWNVIMSCLDSSKQLSIKIIKMAYKLSLWKLVDIAANLMAPSYRQFRDSGELEEVDDALVHFIYSASIELNHEGEKRFR 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02699 1019 Gene3D Potassium Channel Kv1.1; Chain A 673 797 IPR011333 -
Trre12g02699 1019 SUPERFAMILY POZ domain 670 794 IPR011333 -
Trre12g02699 1019 SUPERFAMILY ARM repeat 51 516 IPR016024 -
Trre12g02699 1019 SUPERFAMILY POZ domain 846 946 IPR011333 -
Trre12g02699 1019 Gene3D - 38 388 IPR011989 -
Trre12g02699 1019 CDD BTB_POZ_ZBTB_KLHL-like 846 898 - -
Trre12g02699 1019 PANTHER OS06G0674800 PROTEIN 2 1013 IPR044953 -
Trre12g02699 1019 ProSiteProfiles BTB domain profile. 690 770 IPR000210 GO:0005515
Trre12g02699 1019 ProSiteProfiles BTB domain profile. 821 902 IPR000210 GO:0005515
Trre12g02699 1019 Gene3D Potassium Channel Kv1.1; Chain A 815 989 IPR011333 -
Trre12g02699 1019 Pfam BTB/POZ domain 847 941 IPR000210 GO:0005515
Trre12g02699 1019 Pfam BTB/POZ domain 684 792 IPR000210 GO:0005515
Trre12g02699 1019 SMART BTB_4 834 949 IPR000210 GO:0005515
Trre12g02699 1019 SMART BTB_4 690 801 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02699 Trre-Chr12 32578592 32584036 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre12g02699 BTB 1.2e-05 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02699 - - mtr:25487018 1840.47