LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g02698	ATGATTCATTCGACCATGAAATCATCAACAAGAGAGAAAGAAAACGATCGGAGCTTGAGTTCGCACATCCTCACCCTCCACCGCCGTCTTCTCCACGCCTTAAACCTTGGCACCAGATATTTTGATGACAAGACAAATCAATGGAAGTGGCAGTCCGTTAACATTGAAGTGCAGAAAAATGTACTTCGATCAATTACTGCTTTTCTTGATTCTATATCCGCTGATGCACGTGCCACACGCCATACAATTGTTAAGGAATCTGCTGCTGATATTTTGGGAGCATTGTTATGGATTCTTCAATGCAAAAATGAGCCCTTGTTAAGCATGGCATCAAATGTGGCAGTGAAGTTAGTTAGTGTTTTACCTAGTCAACTATTGCAATTGCGTATGCTGGATCTTGTCTATTGTCTATCATCTTTGCTATCTTCACATCAAGTAGAAGTTGCAATACCCTGTGCTACTGCTTTGAATTCGATTATCTCAAGTCTGAGTGCTACAAGCGAGAAGGCAGTTATTGAAGCACTGAAAGAAACAGAGATTTCCATTTGCATCGTTCGTAATATAAAAGACTGCAGTGGGAAGAAAATTGAATATTTTCTGGAGATGGCTTCACTTTTGAGCACAATTCTGTTAAGATGGCCTTCATCTAGGTTCCCTGTTTGTAATGATGTTGAACTCATGAAAGTCTTAGCAAACATGCATACAAAGACAGATAGTTATATTAAACTTGTTCTTCTAAAGCTGTACACATCTTTAGCTTTATGTGATTCTGTAACACAAAAACTTATAGAGGATGGAAAAGTGTTTCTACAAATGATTGTGCAGGCGATGGGAAAATCAAGCCCTCATGATGTTCGGATAGAGGGGTTTCGGCTTGCTCAATGTCTATTGAGATCTCAAGAAAATTGTTTAAAAGTGATGGATTTGTGTGGTGAAGCTCTTGTTGATGCCATAATTTGTGGTATGAGAGAGACAGGGCCGTGTTCCAAAAAAATTGAGAACAACTATGGTTCTGTATTAGTGGAAGCATGTAAGTTGGCTCTAATTACTCGTTGGGCTGGCGATCATCATATCAAGTTTTGGAAACAAGGAATTGAGAAAGTCCTCCTTAATCTTCTGATTGAAAATATTCATAACCAATCATCTGAATTTGTCTTCTCATTGGAAAAACAAATATCCATGGTGAAGGAGGGACTGAAAGTCAATCATCATGTTGCTCTGAGAAGTTATGTGTGGGACATTCTTGGGTGGCTTACAATTCATTGTGGAGAAAATTCAAACCCTTATGGTTATACACAGGAGAGTGAACTCCACATCAACTTACTAATTCTGTGTGCATGCTTCACTTTTGTGGATGTAATTCAAAAATGGTGCCGGATATGTCAAAATGATGTTGATGATAATTTTCAAAGTGAACCAGTATCAAGGGCTGTTCTAATGATGATATATTCTCCATGTAATTATATTTCCTCACATGCTAGATTTGTATTATCTGATATACTGAAGGTCAAAGGAGATCTGTGCTTGAAAAACTCACTACATACCCTAGATTATATGTCATCCCTGAAAAGCTATAGTTCATTTGATAAACTTCAACTTGTTATCAACTTAATTGGGTTAACTTGTCTTTCAAGTTTACCACAGTATCAAAGATGTATCATAGAAAGCAGAGGAATACAGCCTGTTGTTCTTCTCGTGCAACGATGCTTAAATAATGATATTCATGTAGAAAGGCCTGAAGTTGCTCCCCATTTGCATAATGTATTCCATAAAAGGTCTTGTTGCTGGATTGGTAAAGGAGATTGGGAAGGTTCCAATGTTCTCTTATTTTATGGCCTGTGGGGCTTAGCTGAATTTCTTTATCAGTGTGGCCTTTTACAAGACAATCCTCAGCAATTTACTAAAGAGGTGGCAAACATTAAAACTCAGTTAATTAACAAACTTCATGAGATCTGTAGTAGTACTTCTTTCAGTCCTGGAGCGAAATGGTATGTTTCTTATATTCTAAGTTATTTTGGATTTTACGGTTTCCCAAATGAATATTCCAAAAGGATTGGGATATCTTTTAATAAGGAAGAATATGCAGATTTCCAACTCATTGTAGCAAATGGGGATTCTGTGAGTGTTCATGGTGTTATTCTTGCTGTTCGATGTCCATCAATTCTACCTTCTAAAATGTTATCTAGTAGTAAGAGTTCTAAACAAATAACAGATAATTTTGTTGGAGAGACCGTGCGAGAAGTTCGCTATTCTTCTCACGTTGATTATGAAGCATTGTTGTTATTGTTGGAATATGTATATCTTGGGCGCTTGCATGCAGCAGAAGAAGAAACTGTGAAGAAGCTCAAAATTCTTGCTAAGCGTTGCAATCTACAGCCTCTCTTGCAAATGCTTTGCAGACAATCTCCAAAGTGGGGCACACCTTTCCCCAGCTTCAGTCTTACTTCATCTCTTGATTCAGCTGGAAGTTATTTTTCAGATGTCATTATGGAAGCTAAATTGAATGAGATTGTTGGATGGGCATGTAATATCTGTTCTCATCCCGTACCACATTTGCATGTTCACAAAGTCATATTGCAATCTGGCTGTGATTATCTACAGGGTTTGTTCAGATCAGGAATGCAAGAGAGTCATTCACAAGCCATAAAGGTTGATATTAGCTGGGAAGCATTGATTAAACTGGTGCATTGGTTTTATTCTGATGAGCTGCCGAATCCCCCTTCTGGTTGTTTGTGGTTTAACATGGATGATCAAGAAAAGCTATTCAATTTGCAACCATATGTGGAGCTTTGTTGGCTTGCTGAGTTCTGGATTATGGAAAGTATTCAAGAAGCCTGCTGGAATGTGATTATGTCTTGTCTTGACTCTTCTAAGCAGTTGTCCATTAAAATAATCAAAATGGCTTATAAGCTCTCTTTGTGGAAGTTGGTTGACATTGCCGCAAATCTCATGGCTCCTTCATATAGGCAATTTCGGGATTCAGGTGAACTTGAAGAAGTTGATGATGCACTAGTTCACTTCATTTATTCTGCTTCTATTGAACTTAACCACGAAGGTGAGAAACGCTTTAGGTGA	3075	0.3802	MIHSTMKSSTREKENDRSLSSHILTLHRRLLHALNLGTRYFDDKTNQWKWQSVNIEVQKNVLRSITAFLDSISADARATRHTIVKESAADILGALLWILQCKNEPLLSMASNVAVKLVSVLPSQLLQLRMLDLVYCLSSLLSSHQVEVAIPCATALNSIISSLSATSEKAVIEALKETEISICIVRNIKDCSGKKIEYFLEMASLLSTILLRWPSSRFPVCNDVELMKVLANMHTKTDSYIKLVLLKLYTSLALCDSVTQKLIEDGKVFLQMIVQAMGKSSPHDVRIEGFRLAQCLLRSQENCLKVMDLCGEALVDAIICGMRETGPCSKKIENNYGSVLVEACKLALITRWAGDHHIKFWKQGIEKVLLNLLIENIHNQSSEFVFSLEKQISMVKEGLKVNHHVALRSYVWDILGWLTIHCGENSNPYGYTQESELHINLLILCACFTFVDVIQKWCRICQNDVDDNFQSEPVSRAVLMMIYSPCNYISSHARFVLSDILKVKGDLCLKNSLHTLDYMSSLKSYSSFDKLQLVINLIGLTCLSSLPQYQRCIIESRGIQPVVLLVQRCLNNDIHVERPEVAPHLHNVFHKRSCCWIGKGDWEGSNVLLFYGLWGLAEFLYQCGLLQDNPQQFTKEVANIKTQLINKLHEICSSTSFSPGAKWYVSYILSYFGFYGFPNEYSKRIGISFNKEEYADFQLIVANGDSVSVHGVILAVRCPSILPSKMLSSSKSSKQITDNFVGETVREVRYSSHVDYEALLLLLEYVYLGRLHAAEEETVKKLKILAKRCNLQPLLQMLCRQSPKWGTPFPSFSLTSSLDSAGSYFSDVIMEAKLNEIVGWACNICSHPVPHLHVHKVILQSGCDYLQGLFRSGMQESHSQAIKVDISWEALIKLVHWFYSDELPNPPSGCLWFNMDDQEKLFNLQPYVELCWLAEFWIMESIQEACWNVIMSCLDSSKQLSIKIIKMAYKLSLWKLVDIAANLMAPSYRQFRDSGELEEVDDALVHFIYSASIELNHEGEKRFR	1024

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g02698	1024	SUPERFAMILY	ARM repeat	57	521	IPR016024	-
	Trre12g02698	1024	Gene3D	-	43	393	IPR011989	-
	Trre12g02698	1024	Gene3D	Potassium Channel Kv1.1; Chain A	820	994	IPR011333	-
	Trre12g02698	1024	ProSiteProfiles	BTB domain profile.	826	907	IPR000210	GO:0005515
	Trre12g02698	1024	Pfam	BTB/POZ domain	689	797	IPR000210	GO:0005515
	Trre12g02698	1024	Pfam	BTB/POZ domain	852	946	IPR000210	GO:0005515
	Trre12g02698	1024	SMART	BTB_4	839	954	IPR000210	GO:0005515
	Trre12g02698	1024	SMART	BTB_4	695	806	IPR000210	GO:0005515
	Trre12g02698	1024	SUPERFAMILY	POZ domain	851	951	IPR011333	-
	Trre12g02698	1024	Gene3D	Potassium Channel Kv1.1; Chain A	678	802	IPR011333	-
	Trre12g02698	1024	CDD	BTB_POZ_ZBTB_KLHL-like	851	903	-	-
	Trre12g02698	1024	ProSiteProfiles	BTB domain profile.	695	775	IPR000210	GO:0005515
	Trre12g02698	1024	PANTHER	OS06G0674800 PROTEIN	7	1018	IPR044953	-
	Trre12g02698	1024	SUPERFAMILY	POZ domain	675	799	IPR011333	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g02698	Trre-Chr12	32578577	32584036	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	TRAF	Trre12g02698		BTB	1.2e-05	CL0033

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g02698	-		-	mtr:25487018	1850.48