Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02676 ATGGCTTCCGAAAACACCACCGCAGAAACCGTTGCCAAAGCCGTAGACTCTCTTCTCAAATGGCGAAAATCAAAGCTTCAAACCGAAAAACCAAAACTCTTCGACGAAGATGAAGAATTCGTTTACCTTATTCTAACCCTAAAAAAAATTCCACACAATAGTCGCGTCAACCCTCACAAAATCCCAATCCCTCATTCCCTTCTCTCTTCCTCATCGGAACAGTGTCTCATCGTTGATGACAGAGCTAACAAGCAAGCTCGTCTCACCAAAGACGAAGCTCAGAAGAAGATTCAATCTGAATCAATTCCTATTTCGAAAGTTCTTAAGCTTTCGAAACTCGCTTCCGATTATCGTCCATTTGAGGCGAAACGGAAGCTTTGTAATTCATATGATTTGTTTTTTGCTGATAAGACTATTGTTCCATTGTTGCCGAGGTTGTTAGGGAAACAGTTTTTCAAGAAGAGGAAGCTTCCGGTGAGTGTTGATTTGAAGAAGATGAATTGGAAGGAGCAGATTGAGAAGGCTTGTTGTTCTGCTTTGTTGTTTTTGAGGACTGGGACTTGTAGTGTTATTAAGGTGGCTAAGTTGAGTATGGAGAGAGATGAGATTGTTGACAATGTGGTTGCTGCTATGGAGGGTGTTGTCGAGGTTTTTCCGAAGAAGTGGGCGGTTGTTAGGTCTTTTCATGTTAAGTTGTTGGAGAGTCTTGCTTTGCCTGTTTATCAGGCTGTTCCTGATGTTAAGTTGAAAATTGAGGGTGTTAAGGATTTGGAGGCTGCCTTGGCGAAGGAAGAGAAGAAGGATCACGATGGGAAAGATGGGAAGAAGAGTAATAAGAAGAAGGGGAGGATTCATGAGATTAAGTATATGGATGATAAAATGAGTGAGGATGGTACGGATCGTGAGGATGTTGATGCTGATGATATTGATGATGATGATGTTGTTAATGGTGGTGGTTTGGTTGATGATGATATTGAGAGTGAAGAATTGGTTGGTAAGAAGGGGAAAAAAGGAATGAAAAAGCGGGATTCTAGTGAATTGGGAAGTGTGAAATCATTAAAGGGTTCTGCTAAAAGGAAGAAGAAAGACGGGTCTGCTGTGAATGAAGCAGAAGAAGGTTCAATCAAGAAGGGCAGCGAAAAGAGAAAGAAATCATCGGTGAAGGACGAGGGTTCGGATAAGAAGAAAAAGAGGTTGGGTGTGAAAGGTGCAGAAGACTTGATCAAGAAGAGTGAAAAGGTTGTGGATGAGGGTTCAGACAAGAAGAAAAGGACAGCGGATGTGAAAGCTGCAAAAGAAGCTTTGATCAAGAAGACCGAAAAGAAATTATCGGCCAAGGACGTGGGTTCGGACAAGAAGACAAAGAGAGTGGATGCGAAGGTAAATGCTAAGAAAACTAAGAAGGCTGTATGA 1413 0.419 MASENTTAETVAKAVDSLLKWRKSKLQTEKPKLFDEDEEFVYLILTLKKIPHNSRVNPHKIPIPHSLLSSSSEQCLIVDDRANKQARLTKDEAQKKIQSESIPISKVLKLSKLASDYRPFEAKRKLCNSYDLFFADKTIVPLLPRLLGKQFFKKRKLPVSVDLKKMNWKEQIEKACCSALLFLRTGTCSVIKVAKLSMERDEIVDNVVAAMEGVVEVFPKKWAVVRSFHVKLLESLALPVYQAVPDVKLKIEGVKDLEAALAKEEKKDHDGKDGKKSNKKKGRIHEIKYMDDKMSEDGTDREDVDADDIDDDDVVNGGGLVDDDIESEELVGKKGKKGMKKRDSSELGSVKSLKGSAKRKKKDGSAVNEAEEGSIKKGSEKRKKSSVKDEGSDKKKKRLGVKGAEDLIKKSEKVVDEGSDKKKRTADVKAAKEALIKKTEKKLSAKDVGSDKKTKRVDAKVNAKKTKKAV 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02676 470 CDD Ribosomal_L1 11 240 IPR028364 -
Trre12g02676 470 MobiDBLite consensus disorder prediction 284 300 - -
Trre12g02676 470 MobiDBLite consensus disorder prediction 326 348 - -
Trre12g02676 470 MobiDBLite consensus disorder prediction 359 458 - -
Trre12g02676 470 SUPERFAMILY Ribosomal protein L1 11 241 IPR023674 -
Trre12g02676 470 FunFam Ribosomal protein L1p/L10e family 86 177 - -
Trre12g02676 470 MobiDBLite consensus disorder prediction 263 470 - -
Trre12g02676 470 Gene3D - 84 177 IPR016095 -
Trre12g02676 470 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 13 235 - -
Trre12g02676 470 Pfam Ribosomal protein L1p/L10e family 19 235 IPR028364 -
Trre12g02676 470 MobiDBLite consensus disorder prediction 301 325 - -
Trre12g02676 470 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02676 Trre-Chr12 32171407 32172819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02676 129 231 Cytoplasmic Ribosomal Protein Gene Family AT2G27530 27.184 6.06e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02676 K14775 - gmx:100815650 428.328