Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02675 ATGAGCAACATAAGCATGGTAGAGGCAAAGCTTCCACCTGGATTCAGATTTCATCCTAGAGATGAAGAACTTGTTTGTGATTATTTGATGAAGAAGGTGACACATAGTGATTCTTTTCTCATGATTGATGTTGACCTTAACAAGTGTGAGCCTTGGGATATTCCTGAAGCAGCATGTGTGGGAGGAAAAGAATGGTATTTCTATACACAAAGAGACCGAAAGTATGCAACAGGGCTACGCACAAATCGTGCAACTGCATCAGGTTATTGGAAGGCAACTGGAAAAGACAGATCTATCCTTCGCAAGGGTACTCTTGTTGGAATGAGAAAGACTTTAGTGTTCTATCAAGGAAGGGCACCTAAAGGGAGAAAAACTGAATGGGTTATGCATGAATTTCGCATTGAGGGTCCTCATGGCCCTCCTAAAATTTCTTCTTCTAAGGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTGCTACAAAACCAAGCATGGGTAGTTGCTATGATGACACAGGATCTTCATCACTTCCAGCATTAATGGATTCTTACATAAGTTTTGATCAAGCTCAATTCCATACAGATGAATTTGAGCAAGTGCCCTGCTTCTCCATTTTTTCTCAAAACCAAACAAACCCTATCTTCAACCATATCACAACCAATAATATGGAACCAAAATTACCAACACCCAACAATAACAATGCAACTACATTTGGAGAAGTACCTTATAGCTTAGACCCTTTATCATGTGATAGAAAAGTTTTAAAAGCTGTTTTGAGTCAACTCTCAAAAATGGAAAGAAACCCTATTAATAATCAAATTCTTAAAGGGTCATCACCAAGCTTAGGAGAAGGAAGTTCTGAAAGTTACTTATCTGATGTGGGTATGCCCCACATGTGGAACAATTATTAA 921 0.3865 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKVTHSDSFLMIDVDLNKCEPWDIPEAACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRSILRKGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPHGPPKISSSKEDWVLCRVFYKNREVATKPSMGSCYDDTGSSSLPALMDSYISFDQAQFHTDEFEQVPCFSIFSQNQTNPIFNHITTNNMEPKLPTPNNNNATTFGEVPYSLDPLSCDRKVLKAVLSQLSKMERNPINNQILKGSSPSLGEGSSESYLSDVGMPHMWNNY 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02675 306 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Trre12g02675 306 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 219 - -
Trre12g02675 306 FunFam NAC domain-containing protein 100-like 20 162 - -
Trre12g02675 306 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Trre12g02675 306 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Trre12g02675 306 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02675 Trre-Chr12 32139525 32146796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02675 2 304 NAC Transcription Factor Family AT1G56010 60.748 3.22e-131 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre12g02675 NAM 1.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02675 - - gmx:100301890 541.962