Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02672 ATGATCAAACATTGGGTATGCACACTTAAATCATCATTTGAAGATGTTCTTGTGTCAAAGGTTGTAGTAGACGACAAAAATCATTCCCGGAATAGAGAGATCATAATCTGGTCGTTTGGAAAAGATAGAAAAATTCTCCCTTATGTTGATTCCAACACCAACTACAAATCAATCTCCGAATCAGAAATGCAGAAGGTGCGATTGATTGGATATTGCGTTGACGGATCACTTTTCATTGTATATGAACATATTGGCAATGGAAACTTGGGTCAATATTTGCATGGAATAGGTAAAGAACCATTACCATGGTCAAGTAGAGTTCAAATTGCTCTAGATTCAACAAGAGGCCTTGAATATATTTTTCAACTTCAGGATTCACATAAGAGTGTGCCTTTTTTTTCTCTTTTTCTGACATGCTGCTTTCTTTATGCACTAATTCATAATTCATTGTTTGTTACTTGCTTTAGGATAAGGAGTGACAGGACATGA 489 0.3558 MIKHWVCTLKSSFEDVLVSKVVVDDKNHSRNREIIIWSFGKDRKILPYVDSNTNYKSISESEMQKVRLIGYCVDGSLFIVYEHIGNGNLGQYLHGIGKEPLPWSSRVQIALDSTRGLEYIFQLQDSHKSVPFFSLFLTCCFLYALIHNSLFVTCFRIRSDRT 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02672 162 Pfam Protein tyrosine and serine/threonine kinase 66 128 IPR001245 GO:0004672|GO:0006468
Trre12g02672 162 Gene3D Transferase(Phosphotransferase) domain 1 55 133 - -
Trre12g02672 162 SUPERFAMILY Protein kinase-like (PK-like) 66 127 IPR011009 -
Trre12g02672 162 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 66 122 IPR044812 GO:0019199|GO:0045087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02672 Trre-Chr12 32097921 32101407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02672 66 122 Receptor kinase-like Gene Family AT3G21630 77.193 2.43e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre12g02672 PK_Tyr_Ser-Thr 2.4e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02672 - K13429 tpra:123921801 109.383