Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02624 ATGACTTGTTTCCCGTTCTCATTCAGCAAGAAATCGTCTTCTTCATTGCCTTCTACAAGACAACATCTAGACAATGATGAAGATGATATTTCAAGCATTCAAAATGTTAAGATCTATACCTACAAAGAACTAAGGAATGCGACTGATAACTTTAGTGCGGCCAATAAAATTGGAGAGGGTGGTTTTGGTTCCGTCTACATGGGTCGACTGAAAGGTGGAAAACTTGCTGCTATAAAGGTTCTTTCTGCTGAATCAAAACAAGGTGTGAAGGAGTTCTTGACAGAGATTAACATGATCTCCGAAATAGAGCATGAAAATTTGGTCAAGTTATATGGTTGTTGCGTGGAAAAAAATAACAGGATTTTAGTATACAATTACCTCGAGAATAATAGCCTTTCACGAACTCTTCAAGGTGGTCATGATAGTATCTACTTTGATTGGCGAACGCGATGTAAAATAGGTGTTGGGGTTGCACGCGGGCTTGCCTTTCTACATGAAGAAGTAAGGCCTCTTATCATTCATAGGGATATAAAAGCAAGCAATATTCTACTTGACAAAGACCTTACACCCAAGATATCCGATTTCGGTCTTGCAAAGCTATTGCCAGCAAATGCAACTCATGTCAGCACACGTGTAGCAGGAACACTAGGTTATTTGGCACCCGAGTACGCGATAGGAGGGAGACTTACACGAAAAGCAGACATTTACAGTTTTGGTGTCCTCCTTATCGAGATAGTCAGTGGGAGATGCAACACAAATACGCGACTTCCAGTAGAAGAACAATTCATTCTAGAGAGGACATGGGAACTTTACGAGCGAAAGGAATTAGTTGCTCTGGTAGATACATCACTAAACGGGGAATTCGACGCTGAACAGGCCTGTAAATTTCTGAAGATTGGTCTTCTTTGCACTCAGGAATCTCCGAAGCGTCGGCCATCCATGTCTACTGTGGTCAAGATGCTTACAGGAGAGATGGAAGTTGATGACAGTAAGATGACAAAACCTGCCTTAATTTCTGATTTTATGGACCTTAAAGTTAGACATAAACAAGAAAGTATAATCGATACGAGGACTTTATCTTCATATAATACATCGTCTGCCTCGGAGCATCAGGAGGACACTACCATTATATCAGCTGCAACTTCAACCTTCACTACACAACATGATCACAGCATGTAA 1179 0.4088 MTCFPFSFSKKSSSSLPSTRQHLDNDEDDISSIQNVKIYTYKELRNATDNFSAANKIGEGGFGSVYMGRLKGGKLAAIKVLSAESKQGVKEFLTEINMISEIEHENLVKLYGCCVEKNNRILVYNYLENNSLSRTLQGGHDSIYFDWRTRCKIGVGVARGLAFLHEEVRPLIIHRDIKASNILLDKDLTPKISDFGLAKLLPANATHVSTRVAGTLGYLAPEYAIGGRLTRKADIYSFGVLLIEIVSGRCNTNTRLPVEEQFILERTWELYERKELVALVDTSLNGEFDAEQACKFLKIGLLCTQESPKRRPSMSTVVKMLTGEMEVDDSKMTKPALISDFMDLKVRHKQESIIDTRTLSSYNTSSASEHQEDTTIISAATSTFTTQHDHSM 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02624 392 FunFam cold-responsive protein kinase 1 127 337 - -
Trre12g02624 392 MobiDBLite consensus disorder prediction 1 20 - -
Trre12g02624 392 Pfam Protein kinase domain 53 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02624 392 Gene3D Phosphorylase Kinase; domain 1 21 126 - -
Trre12g02624 392 ProSitePatterns Protein kinases ATP-binding region signature. 57 79 IPR017441 GO:0005524
Trre12g02624 392 FunFam cold-responsive protein kinase 1 21 126 - -
Trre12g02624 392 Gene3D Transferase(Phosphotransferase) domain 1 127 338 - -
Trre12g02624 392 ProSiteProfiles Protein kinase domain profile. 51 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02624 392 MobiDBLite consensus disorder prediction 1 26 - -
Trre12g02624 392 SUPERFAMILY Protein kinase-like (PK-like) 29 321 IPR011009 -
Trre12g02624 392 SMART serkin_6 51 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02624 392 CDD STKc_IRAK 57 323 - -
Trre12g02624 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Trre12g02624 392 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 34 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02624 Trre-Chr12 31390665 31392704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02624 39 324 Receptor kinase-like Gene Family AT1G07650 57.292 5.67e-108 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g02624 Pkinase 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02624 - - gmx:100782320 586.645