Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre12g02611 | ATGCTGATATTAGTTGGAAATTTGCAAGGAACAATGAGTTATCTTGCTTCACCAGTGAGTTTAGGTAGTTTCAATGGTGTGAGTAGTTCAACTAGAATGCCACATTCTGTTGTTAGAAGAATTTCTGTTTCAAGAGGGAATTGTAATAAAGGGAAAAAAAGATGGCATTGTGTTTCTTTGTCTGTTTGTAGATATTCAGTTACTACAACTGATTTTGTTGCTAACCAAGGGAATTCAGTTTCTCTTGATTCTACTAACATTGATGATGATAATAAAGGTGGTGATAGTGGTGGTGTTGGTGGTAGTTTTGTTCTTAAACCTCCTCCTAAGCCTGTTTTGAAGTCCTCTAGTAGTAATGATGTGGATGAGAGGACTAAGGTGATTGAATCACTTGGAGAGGTTTTGGAGAAGGCTGAAAAGCTTGAAAATCCTAAGTTGGATAGTGAAAGAAGTAATGGTTCGGTAAGTAAACCGGCAAGACCGGAGACAAATGTTAAAGCGGGGATAAATGTTAAACCTAAGGATGATAATCCGGTAAATTCGTTACAAAAACATAAGTCTAAGACATTGAAGAGTATATGGCGTAAAGGAGATTCGATTGCAAGTGTGCAGAGAATTGTGAAGGAAGAACCTAAGCCTAGTATCAAGAGAAGTGAAGTGGGGGAATCACAGATAGTGGGAGGGGAGAAGGTAACATCTCAGTCTAGTGATCCTCAGCCTCCTTCGAGACCTCAACCGACATTACTGTCTAGGCCTTCTATAGCTCCGCCGCCCCCACCACCCCCGCCTCTCGTTAAAAAGCCTGTTATCTTGAAGGATGATAGAGGGCAAGGTGAAACACCTGTTACGTCTAAAGAAAGGAAGGGACCTATCTTGATTGATAAGTTTGCTTCAAAGAAACCGGAAGTTGATCCTGTGATTGCTCGATCTGTCATGGCTCCTTCCAAACCAGGGAAGGCTCCTCCCCAAGGAAGGTTTAAAGATGATTACCGGAGGAGAGGTGCTTCATCAGGGGCAGGAGGACCAAGAAGACGAATGGTGGTGAATGATGATGATAGTTCCGGTGCTACAAGAAAAGGAAGGAAATGGAGTAAAGCAAGTCGTAAGGCGGTACGACTTCAGGCTGCCAGGGAAGCTGCTCCTGTTAAAGTTGAAATTCTAGAGGTCAGTGACAATGGTATGCTGGTGGAGGAGTTGGCATACAATTTGGCGACCACTGAAGGTGAAATCCTCGGTTCTTTGTACTCCAAAGGAATTAAACCAGACGGGGTGCAAACTCTAGACAAGGATATGGTGAAGATGATATGTAAAGAATATGAAGTGGAAGTCATCGATGCCGATCCTTTCAAAGTTGAAGGATTAGTGAATAGAAGGGAAATTCTCGAGGAAGATGACCTTGACAAACTCAAAGACAGACCTCCTGTTATTACTATCATGGGCCATGTAGATCACGGCAAAACAACTCTGTTGGATCATATAAGGAAGACCAAGGTAGCTGCTTCTGAAGCTGGTGGGATCACACAAGGAATTGGGGCTTATAAAGTGCAAGTACCTGTTGATGGAAAAACGTTGCCGTGTGTTTTTCTCGACACTCCTGGGCACGAGGCATTTGGGGCAATGAGAGCCCGTGGAGCAAGCGTAACAGACATTGCTATTATTGTTGTGGCTGCTGATGATGGTATTCGTCCTCAAACAAGTGAAGCTATAGCTCATGCCAAAGCAGCAGGAGTACCGATGATAATTGCTATAAACAAGATAGATAAAGATGGAGCAAATCCAGATCGAGTTATGCAAGAGCTTTCTTCAATTGGTCTGATGCCAGAAGACTGGGGTGGTGACGTCCCGATGGTTCAGATAAGTGCTCTTCAAGGGCAGAATGTAGACGATCTTTTGGAAACAGTTATGCTTGTTGCCGAGTTGCAAGAACTGAAAGCTAATCCTGATAGAAGTGCAAAGGGAACAGTCATTGAGGCAGGCTTGGATAAATCAAAAGGACCATTTGCTACATTTATTGTGCAGAATGGAACACTTAGAAGGGGTGATATAGTAGTTTGTGGAGGATCTTTTGGAAAGGTGCGAGCTTTATTCGATGATAGTGGAAAGCGTGTTGATGAAGCTACACCTTCGATACCTGTACAGGTTATTGGATTGAATAATGTTCCAGTTGCTGGTGATGTATTTGAGGTTGTTGAGTCCCTTGATACTGCGCGTGAAAAGGCAGAGTCCCGTGTTATGTCATTGCGAGATGAGCGTATTTCAGCAAAGGCAGGAGATGGCAAGGTCACCCTTTCTTCTTTAGCTTCTGCAGTTTCGTCAGGAAAGCTTTCCGGATTAGACTTGCACCAATTGAATGTTATTTTGAAGGTTGATCTTCAGGGATCCATTGAAGCCGTCAAACAAGCCCTGCAAGTGCTACCACAAGATAATGTCACACTGAAGTTTTTGATGGAAACCACAGGCGATGTAAGCACAAGTGACGTTGACCTTGCGTATGCAAGCAAAGCCATAATTTTTGGATTTAATGTCAAAGCACCAGGCTCTGTGAAAAGCTATGCAGATAATAAAGCCGTTGAGATAAGATTATATAAAGTTATTTATGAATTAATTGATGATGTACGGCAAGCAATGGAAGGGCTCCTGGATTCTGTTGAGGAACAAGTACCAATTGGCTCAGCAGAAATACGGGCCGTATTCAGCAGTCGTAGTAGTCGTGTTGCTGGATGTATGGTTACAGAAGGAAAGGTTACAAAAGGCTGTGGTATTCGAGTCATTCGGAAGGGAAAAGTAGTACATGTTGGTATTCTTGATTCGTTGAAACGGGTGAAAGAAATTGTTAAAGAGGTAAATGCCGGTCTTGAATGTGGAATTGCATTAGAAGACTATGATGATTGGGAAGAGGGTGATATTCTTGAAGCCTTCAACACAATTGAGAAGAGAAGAACCCTTGAAGAAGCCTCAGCATCAATGGCAGCCGCCGTGGAGGGAGTAGGATCTTAA | 2997 | 0.4298 | MLILVGNLQGTMSYLASPVSLGSFNGVSSSTRMPHSVVRRISVSRGNCNKGKKRWHCVSLSVCRYSVTTTDFVANQGNSVSLDSTNIDDDNKGGDSGGVGGSFVLKPPPKPVLKSSSSNDVDERTKVIESLGEVLEKAEKLENPKLDSERSNGSVSKPARPETNVKAGINVKPKDDNPVNSLQKHKSKTLKSIWRKGDSIASVQRIVKEEPKPSIKRSEVGESQIVGGEKVTSQSSDPQPPSRPQPTLLSRPSIAPPPPPPPPLVKKPVILKDDRGQGETPVTSKERKGPILIDKFASKKPEVDPVIARSVMAPSKPGKAPPQGRFKDDYRRRGASSGAGGPRRRMVVNDDDSSGATRKGRKWSKASRKAVRLQAAREAAPVKVEILEVSDNGMLVEELAYNLATTEGEILGSLYSKGIKPDGVQTLDKDMVKMICKEYEVEVIDADPFKVEGLVNRREILEEDDLDKLKDRPPVITIMGHVDHGKTTLLDHIRKTKVAASEAGGITQGIGAYKVQVPVDGKTLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTSEAIAHAKAAGVPMIIAINKIDKDGANPDRVMQELSSIGLMPEDWGGDVPMVQISALQGQNVDDLLETVMLVAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGTLRRGDIVVCGGSFGKVRALFDDSGKRVDEATPSIPVQVIGLNNVPVAGDVFEVVESLDTAREKAESRVMSLRDERISAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNVILKVDLQGSIEAVKQALQVLPQDNVTLKFLMETTGDVSTSDVDLAYASKAIIFGFNVKAPGSVKSYADNKAVEIRLYKVIYELIDDVRQAMEGLLDSVEEQVPIGSAEIRAVFSSRSSRVAGCMVTEGKVTKGCGIRVIRKGKVVHVGILDSLKRVKEIVKEVNAGLECGIALEDYDDWEEGDILEAFNTIEKRRTLEEASASMAAAVEGVGS | 998 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre12g02611 | 998 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 471 | 644 | IPR000795 | GO:0003924|GO:0005525 | |
Trre12g02611 | 998 | FunFam | Translation initiation factor IF-2 | 647 | 765 | - | - | |
Trre12g02611 | 998 | ProSitePatterns | Initiation factor 2 signature. | 933 | 955 | IPR000178 | GO:0003743|GO:0003924|GO:0005525|GO:0006413 | |
Trre12g02611 | 998 | MobiDBLite | consensus disorder prediction | 139 | 296 | - | - | |
Trre12g02611 | 998 | CDD | IF2_mtIF2_II | 651 | 743 | IPR044145 | - | |
Trre12g02611 | 998 | MobiDBLite | consensus disorder prediction | 268 | 296 | - | - | |
Trre12g02611 | 998 | CDD | mtIF2_IVc | 890 | 972 | - | - | |
Trre12g02611 | 998 | MobiDBLite | consensus disorder prediction | 345 | 359 | - | - | |
Trre12g02611 | 998 | Pfam | Translation-initiation factor 2 | 779 | 872 | IPR023115 | - | |
Trre12g02611 | 998 | MobiDBLite | consensus disorder prediction | 202 | 217 | - | - | |
Trre12g02611 | 998 | SUPERFAMILY | Initiation factor IF2/eIF5b, domain 3 | 778 | 890 | IPR036925 | - | |
Trre12g02611 | 998 | MobiDBLite | consensus disorder prediction | 311 | 367 | - | - | |
Trre12g02611 | 998 | CDD | IF2_eIF5B | 474 | 640 | - | - | |
Trre12g02611 | 998 | FunFam | Translation initiation factor IF-2 | 468 | 646 | - | - | |
Trre12g02611 | 998 | Gene3D | - | 779 | 883 | IPR036925 | - | |
Trre12g02611 | 998 | NCBIfam | translation initiation factor IF-2 | 392 | 982 | IPR000178 | GO:0003743|GO:0003924|GO:0005525|GO:0006413 | |
Trre12g02611 | 998 | Hamap | Translation initiation factor IF-2 [infB]. | 7 | 980 | IPR000178 | GO:0003743|GO:0003924|GO:0005525|GO:0006413 | |
Trre12g02611 | 998 | NCBIfam | small GTP-binding protein domain | 473 | 634 | IPR005225 | GO:0005525 | |
Trre12g02611 | 998 | FunFam | Translation initiation factor IF-2 | 779 | 883 | - | - | |
Trre12g02611 | 998 | MobiDBLite | consensus disorder prediction | 78 | 124 | - | - | |
Trre12g02611 | 998 | Gene3D | - | 468 | 646 | IPR027417 | - | |
Trre12g02611 | 998 | FunFam | Translation initiation factor IF-2 | 884 | 981 | - | - | |
Trre12g02611 | 998 | Pfam | Elongation factor Tu GTP binding domain | 476 | 636 | IPR000795 | GO:0003924|GO:0005525 | |
Trre12g02611 | 998 | SUPERFAMILY | Translation proteins | 647 | 731 | IPR009000 | - | |
Trre12g02611 | 998 | Gene3D | Translation factors | 647 | 763 | - | - | |
Trre12g02611 | 998 | MobiDBLite | consensus disorder prediction | 239 | 267 | - | - | |
Trre12g02611 | 998 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 180 | 987 | IPR015760 | - | |
Trre12g02611 | 998 | Gene3D | Translation factors | 884 | 981 | - | - | |
Trre12g02611 | 998 | PRINTS | GTP-binding elongation factor signature | 579 | 588 | IPR000795 | GO:0003924|GO:0005525 | |
Trre12g02611 | 998 | PRINTS | GTP-binding elongation factor signature | 527 | 537 | IPR000795 | GO:0003924|GO:0005525 | |
Trre12g02611 | 998 | PRINTS | GTP-binding elongation factor signature | 475 | 488 | IPR000795 | GO:0003924|GO:0005525 | |
Trre12g02611 | 998 | PRINTS | GTP-binding elongation factor signature | 543 | 554 | IPR000795 | GO:0003924|GO:0005525 | |
Trre12g02611 | 998 | SUPERFAMILY | Translation proteins | 886 | 980 | IPR009000 | - | |
Trre12g02611 | 998 | Coils | Coil | 730 | 750 | - | - | |
Trre12g02611 | 998 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 463 | 647 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre12g02611 | Trre-Chr12 | 31272987 | 31278926 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre12g02611 | 472 | 944 | Eukaryotic Initiation Factors Gene Family | AT1G21160 | 25.986 | 4.81e-29 | 123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre12g02611 | K02519 | - | gmx:100778924 | 1412.51 |