Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02611 ATGCTGATATTAGTTGGAAATTTGCAAGGAACAATGAGTTATCTTGCTTCACCAGTGAGTTTAGGTAGTTTCAATGGTGTGAGTAGTTCAACTAGAATGCCACATTCTGTTGTTAGAAGAATTTCTGTTTCAAGAGGGAATTGTAATAAAGGGAAAAAAAGATGGCATTGTGTTTCTTTGTCTGTTTGTAGATATTCAGTTACTACAACTGATTTTGTTGCTAACCAAGGGAATTCAGTTTCTCTTGATTCTACTAACATTGATGATGATAATAAAGGTGGTGATAGTGGTGGTGTTGGTGGTAGTTTTGTTCTTAAACCTCCTCCTAAGCCTGTTTTGAAGTCCTCTAGTAGTAATGATGTGGATGAGAGGACTAAGGTGATTGAATCACTTGGAGAGGTTTTGGAGAAGGCTGAAAAGCTTGAAAATCCTAAGTTGGATAGTGAAAGAAGTAATGGTTCGGTAAGTAAACCGGCAAGACCGGAGACAAATGTTAAAGCGGGGATAAATGTTAAACCTAAGGATGATAATCCGGTAAATTCGTTACAAAAACATAAGTCTAAGACATTGAAGAGTATATGGCGTAAAGGAGATTCGATTGCAAGTGTGCAGAGAATTGTGAAGGAAGAACCTAAGCCTAGTATCAAGAGAAGTGAAGTGGGGGAATCACAGATAGTGGGAGGGGAGAAGGTAACATCTCAGTCTAGTGATCCTCAGCCTCCTTCGAGACCTCAACCGACATTACTGTCTAGGCCTTCTATAGCTCCGCCGCCCCCACCACCCCCGCCTCTCGTTAAAAAGCCTGTTATCTTGAAGGATGATAGAGGGCAAGGTGAAACACCTGTTACGTCTAAAGAAAGGAAGGGACCTATCTTGATTGATAAGTTTGCTTCAAAGAAACCGGAAGTTGATCCTGTGATTGCTCGATCTGTCATGGCTCCTTCCAAACCAGGGAAGGCTCCTCCCCAAGGAAGGTTTAAAGATGATTACCGGAGGAGAGGTGCTTCATCAGGGGCAGGAGGACCAAGAAGACGAATGGTGGTGAATGATGATGATAGTTCCGGTGCTACAAGAAAAGGAAGGAAATGGAGTAAAGCAAGTCGTAAGGCGGTACGACTTCAGGCTGCCAGGGAAGCTGCTCCTGTTAAAGTTGAAATTCTAGAGGTCAGTGACAATGGTATGCTGGTGGAGGAGTTGGCATACAATTTGGCGACCACTGAAGGTGAAATCCTCGGTTCTTTGTACTCCAAAGGAATTAAACCAGACGGGGTGCAAACTCTAGACAAGGATATGGTGAAGATGATATGTAAAGAATATGAAGTGGAAGTCATCGATGCCGATCCTTTCAAAGTTGAAGGATTAGTGAATAGAAGGGAAATTCTCGAGGAAGATGACCTTGACAAACTCAAAGACAGACCTCCTGTTATTACTATCATGGGCCATGTAGATCACGGCAAAACAACTCTGTTGGATCATATAAGGAAGACCAAGGTAGCTGCTTCTGAAGCTGGTGGGATCACACAAGGAATTGGGGCTTATAAAGTGCAAGTACCTGTTGATGGAAAAACGTTGCCGTGTGTTTTTCTCGACACTCCTGGGCACGAGGCATTTGGGGCAATGAGAGCCCGTGGAGCAAGCGTAACAGACATTGCTATTATTGTTGTGGCTGCTGATGATGGTATTCGTCCTCAAACAAGTGAAGCTATAGCTCATGCCAAAGCAGCAGGAGTACCGATGATAATTGCTATAAACAAGATAGATAAAGATGGAGCAAATCCAGATCGAGTTATGCAAGAGCTTTCTTCAATTGGTCTGATGCCAGAAGACTGGGGTGGTGACGTCCCGATGGTTCAGATAAGTGCTCTTCAAGGGCAGAATGTAGACGATCTTTTGGAAACAGTTATGCTTGTTGCCGAGTTGCAAGAACTGAAAGCTAATCCTGATAGAAGTGCAAAGGGAACAGTCATTGAGGCAGGCTTGGATAAATCAAAAGGACCATTTGCTACATTTATTGTGCAGAATGGAACACTTAGAAGGGGTGATATAGTAGTTTGTGGAGGATCTTTTGGAAAGGTGCGAGCTTTATTCGATGATAGTGGAAAGCGTGTTGATGAAGCTACACCTTCGATACCTGTACAGGTTATTGGATTGAATAATGTTCCAGTTGCTGGTGATGTATTTGAGGTTGTTGAGTCCCTTGATACTGCGCGTGAAAAGGCAGAGTCCCGTGTTATGTCATTGCGAGATGAGCGTATTTCAGCAAAGGCAGGAGATGGCAAGGTCACCCTTTCTTCTTTAGCTTCTGCAGTTTCGTCAGGAAAGCTTTCCGGATTAGACTTGCACCAATTGAATGTTATTTTGAAGGTTGATCTTCAGGGATCCATTGAAGCCGTCAAACAAGCCCTGCAAGTGCTACCACAAGATAATGTCACACTGAAGTTTTTGATGGAAACCACAGGCGATGTAAGCACAAGTGACGTTGACCTTGCGTATGCAAGCAAAGCCATAATTTTTGGATTTAATGTCAAAGCACCAGGCTCTGTGAAAAGCTATGCAGATAATAAAGCCGTTGAGATAAGATTATATAAAGTTATTTATGAATTAATTGATGATGTACGGCAAGCAATGGAAGGGCTCCTGGATTCTGTTGAGGAACAAGTACCAATTGGCTCAGCAGAAATACGGGCCGTATTCAGCAGTCGTAGTAGTCGTGTTGCTGGATGTATGGTTACAGAAGGAAAGGTTACAAAAGGCTGTGGTATTCGAGTCATTCGGAAGGGAAAAGTAGTACATGTTGGTATTCTTGATTCGTTGAAACGGGTGAAAGAAATTGTTAAAGAGGTAAATGCCGGTCTTGAATGTGGAATTGCATTAGAAGACTATGATGATTGGGAAGAGGGTGATATTCTTGAAGCCTTCAACACAATTGAGAAGAGAAGAACCCTTGAAGAAGCCTCAGCATCAATGGCAGCCGCCGTGGAGGGAGTAGGATCTTAA 2997 0.4298 MLILVGNLQGTMSYLASPVSLGSFNGVSSSTRMPHSVVRRISVSRGNCNKGKKRWHCVSLSVCRYSVTTTDFVANQGNSVSLDSTNIDDDNKGGDSGGVGGSFVLKPPPKPVLKSSSSNDVDERTKVIESLGEVLEKAEKLENPKLDSERSNGSVSKPARPETNVKAGINVKPKDDNPVNSLQKHKSKTLKSIWRKGDSIASVQRIVKEEPKPSIKRSEVGESQIVGGEKVTSQSSDPQPPSRPQPTLLSRPSIAPPPPPPPPLVKKPVILKDDRGQGETPVTSKERKGPILIDKFASKKPEVDPVIARSVMAPSKPGKAPPQGRFKDDYRRRGASSGAGGPRRRMVVNDDDSSGATRKGRKWSKASRKAVRLQAAREAAPVKVEILEVSDNGMLVEELAYNLATTEGEILGSLYSKGIKPDGVQTLDKDMVKMICKEYEVEVIDADPFKVEGLVNRREILEEDDLDKLKDRPPVITIMGHVDHGKTTLLDHIRKTKVAASEAGGITQGIGAYKVQVPVDGKTLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTSEAIAHAKAAGVPMIIAINKIDKDGANPDRVMQELSSIGLMPEDWGGDVPMVQISALQGQNVDDLLETVMLVAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGTLRRGDIVVCGGSFGKVRALFDDSGKRVDEATPSIPVQVIGLNNVPVAGDVFEVVESLDTAREKAESRVMSLRDERISAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNVILKVDLQGSIEAVKQALQVLPQDNVTLKFLMETTGDVSTSDVDLAYASKAIIFGFNVKAPGSVKSYADNKAVEIRLYKVIYELIDDVRQAMEGLLDSVEEQVPIGSAEIRAVFSSRSSRVAGCMVTEGKVTKGCGIRVIRKGKVVHVGILDSLKRVKEIVKEVNAGLECGIALEDYDDWEEGDILEAFNTIEKRRTLEEASASMAAAVEGVGS 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02611 998 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 471 644 IPR000795 GO:0003924|GO:0005525
Trre12g02611 998 FunFam Translation initiation factor IF-2 647 765 - -
Trre12g02611 998 ProSitePatterns Initiation factor 2 signature. 933 955 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Trre12g02611 998 MobiDBLite consensus disorder prediction 139 296 - -
Trre12g02611 998 CDD IF2_mtIF2_II 651 743 IPR044145 -
Trre12g02611 998 MobiDBLite consensus disorder prediction 268 296 - -
Trre12g02611 998 CDD mtIF2_IVc 890 972 - -
Trre12g02611 998 MobiDBLite consensus disorder prediction 345 359 - -
Trre12g02611 998 Pfam Translation-initiation factor 2 779 872 IPR023115 -
Trre12g02611 998 MobiDBLite consensus disorder prediction 202 217 - -
Trre12g02611 998 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 778 890 IPR036925 -
Trre12g02611 998 MobiDBLite consensus disorder prediction 311 367 - -
Trre12g02611 998 CDD IF2_eIF5B 474 640 - -
Trre12g02611 998 FunFam Translation initiation factor IF-2 468 646 - -
Trre12g02611 998 Gene3D - 779 883 IPR036925 -
Trre12g02611 998 NCBIfam translation initiation factor IF-2 392 982 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Trre12g02611 998 Hamap Translation initiation factor IF-2 [infB]. 7 980 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Trre12g02611 998 NCBIfam small GTP-binding protein domain 473 634 IPR005225 GO:0005525
Trre12g02611 998 FunFam Translation initiation factor IF-2 779 883 - -
Trre12g02611 998 MobiDBLite consensus disorder prediction 78 124 - -
Trre12g02611 998 Gene3D - 468 646 IPR027417 -
Trre12g02611 998 FunFam Translation initiation factor IF-2 884 981 - -
Trre12g02611 998 Pfam Elongation factor Tu GTP binding domain 476 636 IPR000795 GO:0003924|GO:0005525
Trre12g02611 998 SUPERFAMILY Translation proteins 647 731 IPR009000 -
Trre12g02611 998 Gene3D Translation factors 647 763 - -
Trre12g02611 998 MobiDBLite consensus disorder prediction 239 267 - -
Trre12g02611 998 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 180 987 IPR015760 -
Trre12g02611 998 Gene3D Translation factors 884 981 - -
Trre12g02611 998 PRINTS GTP-binding elongation factor signature 579 588 IPR000795 GO:0003924|GO:0005525
Trre12g02611 998 PRINTS GTP-binding elongation factor signature 527 537 IPR000795 GO:0003924|GO:0005525
Trre12g02611 998 PRINTS GTP-binding elongation factor signature 475 488 IPR000795 GO:0003924|GO:0005525
Trre12g02611 998 PRINTS GTP-binding elongation factor signature 543 554 IPR000795 GO:0003924|GO:0005525
Trre12g02611 998 SUPERFAMILY Translation proteins 886 980 IPR009000 -
Trre12g02611 998 Coils Coil 730 750 - -
Trre12g02611 998 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 647 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02611 Trre-Chr12 31272987 31278926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02611 472 944 Eukaryotic Initiation Factors Gene Family AT1G21160 25.986 4.81e-29 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02611 K02519 - gmx:100778924 1412.51